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lines changed Original file line number Diff line number Diff line change @@ -41,10 +41,29 @@ CLeaning to Analysis: Reproducibility-based Interface for Traits and Exposures
4141* Free software: 3-clause BSD license
4242* Documentation: https://www.hall-lab.org/clarite-python/.
4343
44+ Examples
45+ --------
46+
47+ **Run an EWAS in a few lines of code **
48+
49+ .. image :: docs/source/_static/code/quick_ewas.png
50+
51+ |
52+
53+ **More realistically, perform some QC first: **
54+
55+ .. image :: docs/source/_static/code/filters.png
56+
57+ |
58+
59+ **Genotype data is supported via Pandas-Genomics **
60+
61+ .. image :: docs/source/_static/code/gwas.png
62+
4463Installation
4564------------
4665
47- In order to use the *survey_r * regression_kind in the *ewas * function, R must be installed along with the *survey * library.
66+ In order to use the *r_survey * regression_kind in the *ewas * function, R must be installed along with the *survey * library.
4867
49681. Install R and ensure it is accessible from the command line. You may need to add its location to the PATH environmental variable.
50692. Use *install.packages * in R to install the *survey * library.
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