RAG-GNN/pyproject.toml at main · HasiHays/RAG-GNN · GitHub

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[build-system]
requires = ["setuptools>=45", "wheel", "setuptools-scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"

[project]
name = "rag-gnn"
version = "0.1.0"
description = "Retrieval-Augmented Graph Neural Networks for Biological Network Analysis"
readme = "README.md"
license = {text = "MIT"}
requires-python = ">=3.9"
authors = [
    {name = "Hasi Hays", email = "hasih@uark.edu"},
    {name = "William J. Richardson"},
]
maintainers = [
    {name = "Hasi Hays", email = "hasih@uark.edu"},
]
keywords = [
    "graph neural networks",
    "retrieval augmented generation",
    "biological networks",
    "network embedding",
    "precision medicine",
    "bioinformatics",
]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
]
dependencies = [
    "numpy>=1.21.0",
    "scipy>=1.7.0",
    "scikit-learn>=1.0.0",
    "networkx>=2.6.0",
    "pandas>=1.3.0",
    "matplotlib>=3.4.0",
]

[project.optional-dependencies]
dev = [
    "pytest>=6.0.0",
    "pytest-cov>=2.0.0",
    "black>=21.0.0",
    "flake8>=3.9.0",
    "mypy>=0.900",
    "pre-commit>=2.0.0",
]
docs = [
    "sphinx>=4.0.0",
    "sphinx-rtd-theme>=0.5.0",
    "myst-parser>=0.15.0",
]

[project.urls]
Homepage = "https://github.com/hasihays/RAG-GNN"
Documentation = "https://github.com/hasihays/RAG-GNN#readme"
Repository = "https://github.com/hasihays/RAG-GNN.git"
Issues = "https://github.com/hasihays/RAG-GNN/issues"

[tool.setuptools.packages.find]
where = ["."]
include = ["rag_gnn*"]

[tool.black]
line-length = 100
target-version = ['py39', 'py310', 'py311']
include = '\.pyi?$'

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
addopts = "-v --cov=rag_gnn --cov-report=term-missing"

[tool.mypy]
python_version = "3.9"
warn_return_any = true
warn_unused_configs = true
ignore_missing_imports = true