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CODE_OF_CONDUCT.md

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+---
+title: "Contributor Code of Conduct"
+---
+
+As contributors and maintainers of this project,
+we pledge to follow the [The Carpentries Code of Conduct][coc].
+
+Instances of abusive, harassing, or otherwise unacceptable behavior
+may be reported by following our [reporting guidelines][coc-reporting].
+
+
+[coc-reporting]: https://docs.carpentries.org/policies/coc/incident-reporting.html
+[coc]: https://docs.carpentries.org/topic_folders/policies/code-of-conduct.html

LICENSE.md

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+---
+title: "Licenses"
+---
+
+## Instructional Material
+
+All Carpentries (Software Carpentry, Data Carpentry, and Library Carpentry)
+instructional material is made available under the [Creative Commons
+Attribution license][cc-by-human]. The following is a human-readable summary of
+(and not a substitute for) the [full legal text of the CC BY 4.0
+license][cc-by-legal].
+
+You are free:
+
+- to **Share**---copy and redistribute the material in any medium or format
+- to **Adapt**---remix, transform, and build upon the material
+
+for any purpose, even commercially.
+
+The licensor cannot revoke these freedoms as long as you follow the license
+terms.
+
+Under the following terms:
+
+- **Attribution**---You must give appropriate credit (mentioning that your work
+  is derived from work that is Copyright (c) The Carpentries and, where
+  practical, linking to <https://carpentries.org/>), provide a [link to the
+  license][cc-by-human], and indicate if changes were made. You may do so in
+  any reasonable manner, but not in any way that suggests the licensor endorses
+  you or your use.
+
+- **No additional restrictions**---You may not apply legal terms or
+  technological measures that legally restrict others from doing anything the
+  license permits.  With the understanding that:
+
+Notices:
+
+* You do not have to comply with the license for elements of the material in
+  the public domain or where your use is permitted by an applicable exception
+  or limitation.
+* No warranties are given. The license may not give you all of the permissions
+  necessary for your intended use. For example, other rights such as publicity,
+  privacy, or moral rights may limit how you use the material.
+
+## Software
+
+Except where otherwise noted, the example programs and other software provided
+by The Carpentries are made available under the [OSI][osi]-approved [MIT
+license][mit-license].
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of
+this software and associated documentation files (the "Software"), to deal in
+the Software without restriction, including without limitation the rights to
+use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
+of the Software, and to permit persons to whom the Software is furnished to do
+so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
+
+## Trademark
+
+"The Carpentries", "Software Carpentry", "Data Carpentry", and "Library
+Carpentry" and their respective logos are registered trademarks of [Community
+Initiatives][ci].
+
+[cc-by-human]: https://creativecommons.org/licenses/by/4.0/
+[cc-by-legal]: https://creativecommons.org/licenses/by/4.0/legalcode
+[mit-license]: https://opensource.org/licenses/mit-license.html
+[ci]: https://communityin.org/
+[osi]: https://opensource.org

additional-resources.md

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+---
+title: 'Additional resources'
+teaching: 10
+exercises: 0
+---
+
+:::::::::::::::::::::::::::::::::::::: questions 
+
+- Where can I find further information?
+
+::::::::::::::::::::::::::::::::::::::::::::::::
+
+::::::::::::::::::::::::::::::::::::: objectives
+
+- Find additional resources for image analysis / microscopy online
+
+::::::::::::::::::::::::::::::::::::::::::::::::
+
+## Additional resources
+
+If you want to learn more about image processing and microscopy, we've linked 
+some useful resources below: 
+
+### Bioimage analysis
+- [image.sc forum](https://forum.image.sc/)  
+A general forum for image analysis advice, covering many popular pieces of 
+software e.g. ImageJ, Napari, QuPath and many more.
+
+- [Pete Bankhead's bioimage book](https://bioimagebook.github.io/)  
+A free, online book providing in-depth discussion of biological image analysis. 
+A great resource for delving deeper into the principles discussed during this 
+course.
+
+- [Data Carpentry: Image Processing with Python course
+](https://datacarpentry.org/image-processing/)  
+An online course covering image analysis with python. This is particularly 
+useful if you want to start writing your own scripts to use with Napari.
+
+- [Bioimaging guide](https://www.bioimagingguide.org)  
+An online guide covering principles for design of quantitative microscopy 
+experiments, as well as how to analyse the resulting image data.
+
+- [Robert Haase's lectures on bioimage analysis
+](https://www.youtube.com/playlist?list=PL5ESQNfM5lc7SAMstEu082ivW4BDMvd0U)    
+Recordings of Robert Haase's 2020 lectures on bioimage analysis. Useful for 
+learning general image processing principles, in various pieces of software 
+e.g. ImageJ, python, QuPath...
+
+### Napari
+- [Napari documentation](https://napari.org)  
+Napari's main documentation website, including installation instructions and 
+tutorials.
+
+- [Napari tutorial from ScaDS.AI
+](https://scads.github.io/napari-tutorial-2023/intro.html)  
+Online tutorial showing use of Napari from jupyter notebooks, with various 
+plugins.
+
+### Microscopy
+- [Nikon's Microscopy U](https://www.microscopyu.com/)  
+Website with articles on microscopy principles, covering many different types of 
+microscope.
+
+- [Tutorial: guidance for quantitative confocal microscopy
+](https://www.nature.com/articles/s41596-020-0313-9)  
+Useful paper giving an overview of how to design and setup a quantitative light 
+microscopy experiment.
+
+- [Royal Microscopical Society technical tea break talks
+](https://www.youtube.com/playlist?list=PLoemaChWEBWHINjLnWFIFOZKTE13mm3ac)  
+Recorded short talks from the Royal Microscopical Society on various microscopy 
+principles.
+
+
+### Talks/seminars about image processing
+- [UCL Bioimage interest group](https://www.ucl.ac.uk/lmcb/ucl-biig)  
+Monthly talks (in person and online) about image analysis of biological images. 
+Open to all.
+
+- [Eurobioimaging virtual pub
+](https://www.eurobioimaging.eu/about-us/virtual-pub)  
+Weekly online talks on various topics related to microscopy and image analysis. 
+Open to all.
+
+### Python
+- [Software carpentry python course
+](https://swcarpentry.github.io/python-novice-inflammation/)  
+Online course providing an introduction to the python programming language.
+
+### Statistics
+- [Nature's 'Points of significance' series
+](https://www.nature.com/collections/qghhqm/pointsofsignificance)    
+A series of articles covering basic principles of statistics.
+
+- [Modern statistics for modern biology book](https://www.huber.embl.de/msmb/)    
+A free online book covering statistics for biology in depth.
+