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Merge pull request #83 from HealthBioscienceIDEAS/km/alternative-plugins
Use napari-skimage for segmentation
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episodes/designing-a-light-microscopy-experiment.md

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@@ -220,9 +220,10 @@ measure the nucleus 'roundness' (a measure of how circular it is). In 3D, we
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could measure nucleus 'sphericity' (a measure of how spherical it is). Which
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measures you use will often depend on which image analysis software you use.
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Many analysis packages have a wide range of shape (morphological) features
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built-in e.g. Napari has a plugin called 'napari-skimage-regionprops' that
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offers [many different features
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](https://www.napari-hub.org/plugins/napari-skimage-regionprops#features).
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built-in e.g. Napari has a plugin called 'napari-skimage', which provides
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access to scikit-image's `regionprops`. See
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[scikit-image's documentation for regionprops](https://scikit-image.org/docs/stable/api/skimage.measure.html#skimage.measure.regionprops)
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for details on the available features.
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### How to quantify?
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