Skip to content
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
17 changes: 17 additions & 0 deletions learners/setup.md
Original file line number Diff line number Diff line change
Expand Up @@ -238,6 +238,23 @@ you may see lots of text printed to the terminal as it downloads these extra
files. This may take up to 5 minutes - so give it some time. This will only
happen once, and the `czi` image will open much faster next time.

::::::::::::::::::::::::::::::::::::::::::: caution
### Potential error
On some Windows systems `bioio-bioformats` dependencies prevent `czi` files
from opening in napari. If this is the case, napari may crash with the following
error message:

`failed with error: bioformats does not support the image`

Uninstalling the `bioio-bioformats` reader (which is not used in this material)
will fix this issue:
```bash
pip uninstall bioio-bioformats
```

Restart napari and try opening `Plate1-Blue-A-12-Scene-3-P3-F2-03.czi` again.
:::::::::::::::::::::::::::::::::::::::::::

::::::::::::::::::::::::::
::::::::::::::::::: solution

Expand Down