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more consistent arg names in resolution search
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-6
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spatialleiden/_resolution_search.py

Lines changed: 8 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -40,7 +40,7 @@ def _search_resolution(
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def search_resolution_latent(
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adata: AnnData,
43-
ncluster: int,
43+
n_clusters: int,
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*,
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start: float = 1,
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step: float = 0.1,
@@ -53,7 +53,7 @@ def search_resolution_latent(
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Parameters
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----------
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adata : anndata.AnnData
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ncluster : int
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n_clusters : int
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Number of clusters.
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start : float, optional
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Starting point for resolution.
@@ -77,12 +77,14 @@ def ncluster4res_leiden(resolution: float) -> int:
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key_added = kwargs.pop("key_added", "leiden")
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80-
return _search_resolution(ncluster4res_leiden, ncluster, start, step, n_iterations)
80+
return _search_resolution(
81+
ncluster4res_leiden, n_clusters, start, step, n_iterations
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)
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def search_resolution_spatial(
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adata: AnnData,
85-
ncluster: int,
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n_clusters: int,
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*,
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start: float = 0.4,
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step: float = 0.1,
@@ -99,7 +101,7 @@ def search_resolution_spatial(
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Parameters
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----------
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adata : anndata.AnnData
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ncluster : int
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n_clusters : int
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Number of clusters.
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start : float, optional
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Starting point for resolution.
@@ -130,7 +132,7 @@ def ncluster4res_spatialleiden(resolution: float) -> int:
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resolution_user = kwargs.pop("resolution", (1, 1))
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return _search_resolution(
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ncluster4res_spatialleiden, ncluster, start, step, n_iterations
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ncluster4res_spatialleiden, n_clusters, start, step, n_iterations
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)
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