simplify pattern for control probes

niklasmueboe · niklasmueboe · commit 33cd947cd870 · 2025-05-05T18:19:40.000+02:00
diff --git a/ovrlpy/io.py b/ovrlpy/io.py
@@ -11,7 +11,7 @@ def _filter_genes(df: pl.DataFrame, remove_features: Collection[str]) -> pl.Data
         df = (
             df.lazy()
             .with_columns(pl.col("gene").cast(pl.String))
-            .filter(~pl.col("gene").str.contains(f"({remove_pattern})"))
+            .filter(~pl.col("gene").str.contains(remove_pattern))
             .with_columns(pl.col("gene").cast(pl.Categorical))
             .collect()
         )

Original file line number	Diff line number	Diff line change
`@@ -11,7 +11,7 @@ def _filter_genes(df: pl.DataFrame, remove_features: Collection[str]) -> pl.Data`
`11`	`11`	`df = (`
`12`	`12`	`df.lazy()`
`13`	`13`	`.with_columns(pl.col("gene").cast(pl.String))`
`14`		`- .filter(~pl.col("gene").str.contains(f"({remove_pattern})"))`
	`14`	`+ .filter(~pl.col("gene").str.contains(remove_pattern))`
`15`	`15`	`.with_columns(pl.col("gene").cast(pl.Categorical))`
`16`	`16`	`.collect()`
`17`	`17`	`)`