Function and variable names harmonized changed to more comprehensive; ROIs->pseudocells, coherence->integrity

Author: sebastiantiesmeyer

ovrlpy/__init__.py

@@ -2,14 +2,14 @@
 
 from ._ovrlp import (
     Visualizer,
-    compute_coherence_map,
     detect_doublets,
-    get_expression_vectors_at_rois,
-    get_rois,
+    get_pseudocell_locations,
     load_visualizer,
-    plot_instance,
+    plot_region_of_interest,
     plot_signal_integrity,
     pre_process_coordinates,
+    run,
+    sample_expression_at_xy,
 )
 
 try:
@@ -21,13 +21,13 @@
 
 
 __all__ = [
-    "compute_coherence_map",
     "detect_doublets",
-    "get_expression_vectors_at_rois",
-    "get_rois",
+    "sample_expression_at_xy",
+    "get_pseudocell_locations",
     "load_visualizer",
-    "plot_instance",
+    "plot_region_of_interest",
     "plot_signal_integrity",
     "pre_process_coordinates",
     "Visualizer",
+    "run",
 ]