Merge branch 'main' into update

Author: niklasmueboe

.pre-commit-config.yaml

@@ -18,7 +18,7 @@ repos:
       - id: no-commit-to-branch
         args: [--branch=main]
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.6
+    rev: v0.11.4
     hooks:
       - id: ruff
       - id: ruff-format

CITATION.cff

@@ -26,7 +26,7 @@ preferred-citation:
   doi: 10.1002/smtd.202401123
   journal: "Small Methods"
   pages: 2401123
-  year: 2024
-  volume: ""
-  number: ""
+  year: 2025
+  volume: 9
+  number: 5
   publisher: "Wiley Online Library"

README.md

@@ -48,17 +48,17 @@ This project follows the [SemVer](https://semver.org/) guidelines for versioning
 If you are using `sainsc` for your research please cite
 
 N. Müller-Bötticher, S. Tiesmeyer, R. Eils, N. Ishaque, "Sainsc: A Computational Tool
-for Segmentation-Free Analysis of In Situ Capture Data" *Small Methods* (2024)
+for Segmentation-Free Analysis of In Situ Capture Data" *Small Methods* (2025)
 https://doi.org/10.1002/smtd.202401123
 
 ```
-@article{sainsc2024,
+@article{sainsc2025,
   author = {Müller-Bötticher, Niklas and Tiesmeyer, Sebastian and Eils, Roland and Ishaque, Naveed},
   title = {Sainsc: A Computational Tool for Segmentation-Free Analysis of In Situ Capture Data},
   journal = {Small Methods},
-  year = {2024},
-  volume = {},
-  number = {},
+  year = {2025},
+  volume = {9},
+  number = {5},
   pages = {2401123},
   doi = {10.1002/smtd.202401123},
 }

docs/source/index.rst

@@ -16,7 +16,7 @@ Citations
 If you are using `sainsc` for your research please cite
 
 N. Müller-Bötticher, S. Tiesmeyer, R. Eils, N. Ishaque, "Sainsc: A Computational Tool
-for Segmentation-Free Analysis of In Situ Capture Data" *Small Methods* (2024)
+for Segmentation-Free Analysis of In Situ Capture Data" *Small Methods* (2025)
 https://doi.org/10.1002/smtd.202401123
 
 .. toctree::