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README.md

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# SSAM-lite-server
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[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](./LICENSE)
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[![DOI:10.1101/2021.09.2x.xxxxxxxx](http://img.shields.io/badge/DOI-10.1101/2021.09.2x.xxxxxxxx-B31B1B.svg)](https://doi.org/10.1101/2021.09.2x.xxxxxxxx)
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[![DOI:10.1101/2021.09.29.462194](http://img.shields.io/badge/DOI-10.1101/2021.09.29.462194-B31B1B.svg)](https://doi.org/10.1101/2021.09.29.462194)
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[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5517607.svg)](https://doi.org/10.5281/zenodo.5517607)
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... is a lightweight implementation of the [SSAM framework](https://www.nature.com/articles/s41467-021-23807-4).
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## Citations
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Sebastian Tiesmeyer, Shashwat Sahay, Niklas Mueller-Boetticher, Roland Eils, Sebastian Mackowiak, Naveed Ishaque.
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Sebastian Tiesmeyer, Shashwat Sahay, Niklas Müller-Bötticher, Roland Eils, Sebastian D. Mackowiak, Naveed Ishaque.
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2021.
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"[SSAM-lite: a light-weight web-based framework for analysis of spatially resolved transcriptomics data](https://biorxiv.org)"
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*bioRxiv*. doi: 10.1101/2021....
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"[SSAM-lite: a light-weight web app for rapid analysis of spatially resolved transcriptomics data](https://www.biorxiv.org/content/10.1101/2021.09.29.462194)"
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*bioRxiv*. doi: 10.1101/2021.09.29.462194
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## Sample data

app/templates/indexMain.html

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to learn more about the methods.
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</div>
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<div style="text-align: center; padding: 15px;">
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SSAM-lite has been designed and implemented by Seastian Tiesmeyer at the Berlin Institute of Health.
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Learn more about SSAM-lite <a href="https://www.biorxiv.org/" target="_blank" rel="noopener noreferrer"><u>here</u></a>. <!-- TODO update Link. -->
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SSAM-lite-Server has been designed and implemented by Seastian Tiesmeyer and Shashwat Sahay at the Berlin Institute of Health.
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Learn more about SSAM-lite <a href="https://www.biorxiv.org/content/10.1101/2021.09.29.462194" target="_blank" rel="noopener noreferrer"><u>here</u></a>.
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</div>
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<div style="text-align: center; padding: 15px;">
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For a comprehensive documentation of the SSAM-lite tool check out our
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If you are using SSAM-lite for your research please cite:
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</div>
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<div style="text-align: center; padding-top: 5px; padding-bottom: 50px;">
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Tiesmeyer S, et al. 2021. SSAM-lite. <i>bioRxiv</i>. doi: 10.1101/2021.... <!-- TODO update citation -->
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Tiesmeyer S, et al. 2021. SSAM-lite: a light-weight web app for rapid analysis of spatially resolved transcriptomics data.
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<i>bioRxiv</i>. doi: 10.1101/2021.09.29.462194
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</div>
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<div class="d-flex">
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<a href="https://www.biorxiv.org/content/10.1101/800748v2" target="_blank"
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rel="noopener noreferrer">
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<a href="https://www.biorxiv.org/content/10.1101/2021.09.29.462194" target="_blank"
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rel="noopener noreferrer">
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<img src="{{ url_for('static', filename='img/logo_biorxiv.png')}}"
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style="height: 40px; width: auto; padding: 5px;">
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</a> <!-- TODO update Link. -->

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