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run_kde memory issue #19
Description
Hi, I am running ssam on MERFISH data and I got stuck on the run_kde step. It keeps returns memory error.
MemoryError: Unable to allocate 1.44 TiB for an array with shape (28153, 35952, 1, 196) and data type float64
I noticed someone has reported this issue earlier. #2
Have you fixed the problem yet? I click the dask branch link but it doesn't seem to work.
https://github.com/eilslabs/ssam/tree/dask
Thanks in advance!!