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timholytimholy
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Create wrappers for other languages
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‎language_wrappers/Makefile

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# This Makefile template requires the following variables to be set
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# in the environment or on the command-line:
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# JULIA: path to julia[.exe] executable
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# BIN: binary build directory
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ifndef JULIA
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$(error "Please pass JULIA=[path of target julia binary], or set as environment variable!")
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endif
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ifndef BIN
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$(error "Please pass BIN=[path of build directory], or set as environment variable!")
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endif
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#=============================================================================
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# location of test source
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SRCDIR := $(abspath $(dir $(lastword $(MAKEFILE_LIST))))
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PKGDIR := $(dir $(SRCDIR))
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JULIAHOME := $(abspath $(JULIA)/../..)
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BUILDSCRIPT := $(BIN)/../share/julia/juliac-buildscript.jl
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# include $(JULIAHOME)/Make.inc
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# FIXME
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SHLIB_EXT := so
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# get the executable suffix, if any
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EXE := $(suffix $(abspath $(JULIA)))
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# get compiler and linker flags. (see: `contrib/julia-config.jl`)
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JULIA_CONFIG := $(JULIA) -e 'include(joinpath(Sys.BINDIR, Base.DATAROOTDIR, "julia", "julia-config.jl"))' --
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CPPFLAGS_ADD :=
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CFLAGS_ADD = $(shell $(JULIA_CONFIG) --cflags)
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LDFLAGS_ADD = -lm $(shell $(JULIA_CONFIG) --ldflags --ldlibs) -ljulia-internal
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#=============================================================================
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release: NMFMerge-jl.$(SHLIB_EXT)
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NMFMerge-jl.$(SHLIB_EXT): $(PKGDIR)/src/NMFMerge.jl $(BUILDSCRIPT)
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$(JULIA) -t 1 -J $(BIN)/../lib/julia/sys.$(SHLIB_EXT) --project --startup-file=no --history-file=no --output-incremental=no --strip-ir --strip-metadata --experimental --trim $(BUILDSCRIPT) $(SRCDIR)/lib.jl --output-lib NMFMerge-jl.so
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check: hello$(EXE) basic_jll$(EXE) # FIXME
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$(JULIA) --depwarn=error $(SRCDIR)/../runtests.jl $(SRCDIR)/trimming
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clean: # FIXME
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-rm -f hello$(EXE) basic_jll$(EXE) init.o hello.o basic_jll.o
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.PHONY: release clean check
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# Makefile debugging trick:
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# call print-VARIABLE to see the runtime value of any variable
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print-%:
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@echo '$*=$($*)'

‎language_wrappers/Manifest.toml

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# This file is machine-generated - editing it directly is not advised
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julia_version = "1.13.0-DEV"
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manifest_format = "2.0"
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project_hash = "02e7b54fdc8b2775dc61d1c22f0018e675cc17a2"
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[[deps.Adapt]]
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deps = ["LinearAlgebra", "Requires"]
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git-tree-sha1 = "f7817e2e585aa6d924fd714df1e2a84be7896c60"
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uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
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version = "4.3.0"
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[deps.Adapt.extensions]
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AdaptSparseArraysExt = "SparseArrays"
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AdaptStaticArraysExt = "StaticArrays"
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[deps.Adapt.weakdeps]
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SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
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StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
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[[deps.AliasTables]]
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deps = ["PtrArrays", "Random"]
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git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff"
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uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8"
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version = "1.1.3"
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[[deps.Artifacts]]
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uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
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version = "1.11.0"
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[[deps.Base64]]
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uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
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version = "1.11.0"
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[[deps.Compat]]
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deps = ["TOML", "UUIDs"]
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git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215"
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uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
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version = "4.16.0"
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weakdeps = ["Dates", "LinearAlgebra"]
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[deps.Compat.extensions]
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CompatLinearAlgebraExt = "LinearAlgebra"
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[[deps.CompilerSupportLibraries_jll]]
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deps = ["Artifacts", "Libdl"]
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uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
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version = "1.3.0+1"
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[[deps.DataAPI]]
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git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
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uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
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version = "1.16.0"
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[[deps.DataStructures]]
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deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
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git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0"
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uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
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version = "0.18.22"
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[[deps.Dates]]
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deps = ["Printf"]
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uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
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version = "1.11.0"
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[[deps.DocStringExtensions]]
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git-tree-sha1 = "e7b7e6f178525d17c720ab9c081e4ef04429f860"
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uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
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version = "0.9.4"
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[[deps.GsvdInitialization]]
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deps = ["LinearAlgebra", "NMF", "NonNegLeastSquares", "TSVD"]
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git-tree-sha1 = "81fcc977bf68da9024ef413e2588af2e8f3a8d8b"
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uuid = "2ac24108-be9c-42b8-8d78-6a4f62a87e7d"
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version = "1.0.0"
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[[deps.InteractiveUtils]]
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deps = ["Markdown"]
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uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
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version = "1.11.0"
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[[deps.IrrationalConstants]]
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git-tree-sha1 = "e2222959fbc6c19554dc15174c81bf7bf3aa691c"
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uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
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version = "0.2.4"
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[[deps.JuliaSyntaxHighlighting]]
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deps = ["StyledStrings"]
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uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011"
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version = "1.12.0"
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[[deps.Libdl]]
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uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
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version = "1.11.0"
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[[deps.LinearAlgebra]]
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deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
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uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
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version = "1.12.0"
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[[deps.LogExpFunctions]]
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deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
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git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f"
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uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
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version = "0.3.29"
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[deps.LogExpFunctions.extensions]
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LogExpFunctionsChainRulesCoreExt = "ChainRulesCore"
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LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables"
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LogExpFunctionsInverseFunctionsExt = "InverseFunctions"
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[deps.LogExpFunctions.weakdeps]
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ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
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ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
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InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"
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[[deps.Logging]]
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uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
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version = "1.11.0"
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[[deps.Markdown]]
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deps = ["Base64", "JuliaSyntaxHighlighting", "StyledStrings"]
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uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
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version = "1.11.0"
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[[deps.Missings]]
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deps = ["DataAPI"]
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git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d"
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uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
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version = "1.2.0"
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[[deps.NMF]]
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deps = ["LinearAlgebra", "NonNegLeastSquares", "PrecompileTools", "Printf", "Random", "RandomizedLinAlg", "Statistics", "StatsBase"]
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git-tree-sha1 = "d098a41cbc60447b430c32e1ac271193652205ee"
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uuid = "6ef6ca0d-6ad7-5ff6-b225-e928bfa0a386"
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version = "1.0.3"
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[[deps.NMFMerge]]
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deps = ["DataStructures", "GsvdInitialization", "LinearAlgebra", "NMF", "TSVD"]
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path = ".."
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uuid = "9cc52eda-dfaf-4e21-aae3-9f26bed153a3"
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version = "1.0.1"
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[[deps.NonNegLeastSquares]]
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deps = ["LinearAlgebra", "SparseArrays"]
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git-tree-sha1 = "cdc11138e74a0dd0b82e7d64eb1350fdf049d3b1"
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uuid = "b7351bd1-99d9-5c5d-8786-f205a815c4d7"
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version = "0.4.1"
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[[deps.OpenBLAS_jll]]
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deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
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uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
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version = "0.3.29+0"
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[[deps.OrderedCollections]]
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git-tree-sha1 = "cc4054e898b852042d7b503313f7ad03de99c3dd"
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uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
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version = "1.8.0"
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[[deps.PrecompileTools]]
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deps = ["Preferences"]
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git-tree-sha1 = "3fcd5c8c872f7314a7bb5c1328d0349283d5b82d"
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uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
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version = "1.3.1"
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[[deps.Preferences]]
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deps = ["TOML"]
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git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6"
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uuid = "21216c6a-2e73-6563-6e65-726566657250"
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version = "1.4.3"
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[[deps.Printf]]
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deps = ["Unicode"]
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uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
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version = "1.11.0"
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[[deps.PtrArrays]]
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git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d"
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uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d"
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version = "1.3.0"
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[[deps.Random]]
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deps = ["SHA"]
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uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
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version = "1.11.0"
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[[deps.RandomizedLinAlg]]
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deps = ["LinearAlgebra", "Random", "Test"]
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git-tree-sha1 = "de93780c85c207586369522af7525aa3011b09c3"
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uuid = "0448d7d9-159c-5637-8537-fd72090fea46"
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version = "0.1.0"
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[[deps.Requires]]
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deps = ["UUIDs"]
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git-tree-sha1 = "62389eeff14780bfe55195b7204c0d8738436d64"
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uuid = "ae029012-a4dd-5104-9daa-d747884805df"
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version = "1.3.1"
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[[deps.SHA]]
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uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
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version = "0.7.0"
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[[deps.Serialization]]
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uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
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version = "1.11.0"
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[[deps.SortingAlgorithms]]
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deps = ["DataStructures"]
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git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085"
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uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
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version = "1.2.1"
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[[deps.SparseArrays]]
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deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
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uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
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version = "1.12.0"
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[[deps.Statistics]]
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deps = ["LinearAlgebra"]
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git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0"
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uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
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version = "1.11.1"
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weakdeps = ["SparseArrays"]
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[deps.Statistics.extensions]
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SparseArraysExt = ["SparseArrays"]
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[[deps.StatsAPI]]
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deps = ["LinearAlgebra"]
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git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed"
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uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
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version = "1.7.0"
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[[deps.StatsBase]]
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deps = ["AliasTables", "DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
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git-tree-sha1 = "29321314c920c26684834965ec2ce0dacc9cf8e5"
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uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
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version = "0.34.4"
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[[deps.StyledStrings]]
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uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b"
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version = "1.11.0"
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[[deps.SuiteSparse_jll]]
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deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]
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uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
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version = "7.10.1+0"
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[[deps.TOML]]
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deps = ["Dates"]
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uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
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version = "1.0.3"
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[[deps.TSVD]]
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deps = ["Adapt", "LinearAlgebra"]
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git-tree-sha1 = "c39caef6bae501e5607a6caf68dd9ac6e8addbcb"
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uuid = "9449cd9e-2762-5aa3-a617-5413e99d722e"
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version = "0.4.4"
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[[deps.Test]]
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deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
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uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
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version = "1.11.0"
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[[deps.UUIDs]]
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deps = ["Random", "SHA"]
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uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
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version = "1.11.0"
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[[deps.Unicode]]
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uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
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version = "1.11.0"
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[[deps.libblastrampoline_jll]]
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deps = ["Artifacts", "Libdl"]
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uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
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version = "5.12.0+0"

‎language_wrappers/Project.toml

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[deps]
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NMFMerge = "9cc52eda-dfaf-4e21-aae3-9f26bed153a3"

‎language_wrappers/lib.jl

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module NMFMergeLib
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using NMFMerge
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struct ReturnValue
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niters::Int32
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converged::Bool
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objvalue::Float64
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end
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Base.@ccallable function nmfmerge_inplace(Wout::Matrix{Float64}, Hout::Matrix{Float64}, X::Matrix{Float64}, ncomponents::Int32, tol::Float64, maxiter::Int32)::ReturnValue
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result = nmfmerge(X, ncomponents; tol_final=tol, maxiter)
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Wout .= result.W
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Hout .= result.H
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return ReturnValue(result.niters, result.converged, result.objvalue)
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end
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end

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