Merge pull request #224867 from ankane/polypolish

polypolish 0.6.0 (new formula)

Author: BrewTestBot

Formula/p/polypolish.rb

@@ -0,0 +1,32 @@
+class Polypolish < Formula
+  desc "Short-read polishing tool for long-read assemblies"
+  homepage "https://github.com/rrwick/Polypolish"
+  url "https://github.com/rrwick/Polypolish/archive/refs/tags/v0.6.0.tar.gz"
+  sha256 "99ea799352cecf6723b73fb4c5c64dd2091ff1cdab6eef10309e06c642e56855"
+  license "GPL-3.0-or-later"
+  head "https://github.com/rrwick/Polypolish.git", branch: "main"
+
+  bottle do
+    sha256 cellar: :any_skip_relocation, arm64_sequoia: "c1422d344c3b60428cf5e201ecbe405edad60e3f0404ce8029e3d713846220ae"
+    sha256 cellar: :any_skip_relocation, arm64_sonoma:  "0b90a3ac3ed81082d4da52cf6a596dfe61a397dac3a4e994bbea5ca3417f6476"
+    sha256 cellar: :any_skip_relocation, arm64_ventura: "a8b92132e290d9acc0dfda7f77733d753a047a9300b48addb519d7da6bad1859"
+    sha256 cellar: :any_skip_relocation, sonoma:        "33cb907b077ec76328435441f43a1bf57fcca5cbe2f9959ab6a30c4b21524b63"
+    sha256 cellar: :any_skip_relocation, ventura:       "921305cc787de3679dada5645917f3e183e96aac6f4dccc8930adcb395eda850"
+    sha256 cellar: :any_skip_relocation, x86_64_linux:  "fe3e0cff58d47896e53f46ad77f65e9ab63c6f6a1242fbd88de05584d7dad59d"
+  end
+
+  depends_on "rust" => :build
+
+  def install
+    system "cargo", "install", *std_cargo_args
+  end
+
+  test do
+    (testpath/"test.fasta").write <<~EOS
+      >U00096.2:1-70
+      AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
+    EOS
+    output = shell_output("#{bin}/polypolish polish test.fasta")
+    assert_match "polypolish", output
+  end
+end