Merge pull request #225035 from ankane/kraken2

kraken2 2.1.5 (new formula)

Author: BrewTestBot

Formula/k/kraken2.rb

@@ -0,0 +1,42 @@
+class Kraken2 < Formula
+  desc "Taxonomic sequence classification system"
+  homepage "https://github.com/DerrickWood/kraken2"
+  url "https://github.com/DerrickWood/kraken2/archive/refs/tags/v2.1.5.tar.gz"
+  sha256 "6feb9b1e0840a574598b84a3134a25622e5528ac6d0f4c756cdab629275d8f42"
+  license "MIT"
+  head "https://github.com/DerrickWood/kraken2.git", branch: "master"
+
+  bottle do
+    sha256 cellar: :any_skip_relocation, arm64_sequoia: "3ee275caf279a788ea6a7bce93190ab31165bbdc79fd1dc812ba120336a1918f"
+    sha256 cellar: :any_skip_relocation, arm64_sonoma:  "fb22cec35e13ee86ec66e1f65f90a4b6454e418da5df13bf786e48a1dc846e8b"
+    sha256 cellar: :any_skip_relocation, arm64_ventura: "a875a1a58dde84ca8651102d3e99fb1eb0ff2c1089fc5fc4587e56f0ac0ece33"
+    sha256 cellar: :any_skip_relocation, sonoma:        "84e6e9db41f330e526dcdaa1061c530ecfc351f1f89004ce69695b480fffc195"
+    sha256 cellar: :any_skip_relocation, ventura:       "43e3bb6870bb0d9cf4d5a9d09bc8850939922acca99ccfa56a84c9f77d9a3162"
+    sha256 cellar: :any_skip_relocation, x86_64_linux:  "0ca42ce0aa2688d8ca4f9bb123ab1cf372a79e8944f511312a26b9da4ead3927"
+  end
+
+  depends_on "[email protected]"
+  depends_on "wget"
+
+  uses_from_macos "perl"
+  uses_from_macos "rsync"
+  uses_from_macos "zlib"
+
+  on_macos do
+    depends_on "libomp"
+  end
+
+  def install
+    system "./install_kraken2.sh", libexec
+    %w[k2 kraken2 kraken2-build kraken2-inspect].each do |f|
+      bin.install_symlink libexec/f
+    end
+    pkgshare.install "data"
+  end
+
+  test do
+    cp pkgshare/"data/Lambda.fa", testpath
+    system bin/"kraken2-build", "--add-to-library", "Lambda.fa", "--db", "testdb"
+    assert_path_exists "testdb"
+  end
+end