cheese3d/pixi.toml at main · Hou-Lab-CSHL/cheese3d · GitHub

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[workspace]
name = "cheese3d"
channels = ["conda-forge", "nvidia", "apple"]
platforms = ["linux-64", "osx-arm64"]

[environments]
docs = { features = ["docs"] }
dev = { features = ["dev"] }

[tasks]
docs = "cd docs && pixi run -e docs sphinx-build -b html source _build/html"
docs-serve = "cd docs && pixi run -e docs sphinx-autobuild --port 8090 -b html source _build/html"
test = "cd packages/cheese3d && pixi run -e dev pytest"
test-unit = "cd packages/cheese3d && pixi run -e dev pytest -m unit"
test-integration = "cd packages/cheese3d && pixi run -e dev pytest -m integration"
test-cov = "cd packages/cheese3d && pixi run -e dev pytest --cov=cheese3d --cov-report=html"

[activation.env]
LD_LIBRARY_PATH = "$CONDA_PREFIX/lib:$LD_LIBRARY_PATH"
PYTHONNOUSERSITE = "1"

[dependencies]
python = "3.10.*"
c-compiler = "*"
cxx-compiler = "*"
ffmpeg = "==4.4.1"
av = "==9.2.0"
pillow = ">=9.0.0"

[pypi-dependencies]
cheese3d_annotator = { path = "packages/cheese3d-annotator", editable = true }
cheese3d = { path = "packages/cheese3d", editable = true }

[target.linux-64.dependencies]
cudatoolkit = "11.7.*"
cudnn = "8.*"

[target.osx-arm64.dependencies]
tensorflow-deps = "*"
hdf5 = "*"
pytables = "*"

[feature.docs.pypi-dependencies]
sphinx = ">=7.2.0,<8.0.0"
sphinx-autodoc-typehints = ">=1.25.0,<2.0.0"
myst-parser = ">=2.0.0,<3.0.0"
nbsphinx = ">=0.9.0,<1.0.0"
sphinx-autobuild = ">=2024.10.3,<2025"
sphinx-book-theme = ">=1.1.4,<2"
sphinxemoji = ">=0.3.1,<0.4"

[feature.dev.pypi-dependencies]
textual-dev = "*"
pytest = ">=7.4.0,<9.0.0"
pytest-cov = ">=4.1.0,<6.0.0"