Merge pull request #1616 from HumanCellAtlas/ac-fix-collection-institute-Issue1614

Fix collection_institute reference typo

Author: arschat

changelog.md

@@ -7,6 +7,10 @@ and (starting with v4.0.0) this project adheres to [Semantic Versioning](http://
 
 ## [Unreleased](https://github.com/HumanCellAtlas/metadata-schema/tree/staging)
 
+### [type/biomaterial/specimen_from_organism.json - v11.0.0] - 2025-04-29
+### Fixed
+Fixed typo in specimen_from_organism collection_institute field
+
 ## [Released](https://github.com/HumanCellAtlas/metadata-schema/)
 
 ### [type/biomaterial/cell_suspension.json - v14.1.0] - 2025-04-08

docs/jsonBrowser/type.md

@@ -355,7 +355,7 @@ adjacent_diseases | Short description of the disease(s) adjacent to the specimen
 state_of_specimen | State of the specimen at the time of collection. | object | no | [See module  state_of_specimen](module.md#state-of-specimen) | State of specimen |  | 
 preservation_storage | Information about how a specimen was preserved and/or stored over a period of time. | object | no | [See module  preservation_storage](module.md#preservation-storage) | Preservation/Storage |  | 
 collection_time | When the biomaterial was collected. | string | no |  | Time of collection |  | 2016-01-21T00:00:00Z; 2016-03
-collection_institute | Institute where the biomaterial was collected on. | object | no | [See module  organ_ontology](module.md#organ-ontology) | Collection institute |  | 
+collection_institute | Institute where the biomaterial was collected on. | object | no | [See module  collection_institute](module.md#collection-institute) | Collection institute |  | 
 purchased_specimen | Information about a purchased specimen. | object | no | [See module  purchased_reagents](module.md#purchased-reagents) | Purchased specimen |  | 
 
 ## Cell suspension

json_schema/type/biomaterial/specimen_from_organism.json

@@ -120,7 +120,7 @@
         "collection_institute": {
             "description": "Institute where the biomaterial was collected on.",
             "type": "object", 
-            "$ref": "module/ontology/organ_ontology.json",
+            "$ref": "module/biomaterial/collection_institute.json",
             "user_friendly": "Collection institute"
         },
         "purchased_specimen": {

json_schema/versions.json

@@ -1,5 +1,5 @@
 {
-    "last_update_date": "2025-04-08T09:53:05Z",
+    "last_update_date": "2025-04-29T11:53:30Z",
     "version_numbers": {
         "core": {
             "biomaterial": {
@@ -99,7 +99,7 @@
                 "donor_organism": "18.0.0",
                 "imaged_specimen": "3.5.0",
                 "organoid": "11.5.0",
-                "specimen_from_organism": "10.10.0"
+                "specimen_from_organism": "11.0.0"
             },
             "file": {
                 "analysis_file": "8.0.0",

src/schema_linter.py

@@ -31,7 +31,7 @@
 
 # Property attributes
 
-property_attributes = ['description', 'type', 'pattern', 'example', 'enum', '$ref', 'user_friendly', 'items', 'guidelines', 'format', 'comment', 'maximum', 'minimum', 'oneOf', 'oneOf', 'bionetworks']
+property_attributes = ['description', 'type', 'pattern', 'example', 'enum', '$ref', 'user_friendly', 'items', 'guidelines', 'format', 'comment', 'maximum', 'minimum', 'oneOf', 'oneOf', 'bionetworks', 'minLength']
 
 ontology_attributes = ['graph_restriction', 'ontologies', 'classes', 'relations', 'direct', 'include_self']