Update version of hca cli (#138)

* Update version of hca cli

This version of the hca cli includes a fix to uploading large files

* Update docker image version

* Update hca cli version

* Update docker image version

Author: samanehsan

adapter_pipelines/Optimus/adapter.wdl

@@ -139,7 +139,7 @@ workflow AdapterOptimus {
   Int max_cromwell_retries = 0
   Boolean add_md5s = false
 
-  String pipeline_tools_version = "v0.48.2"
+  String pipeline_tools_version = "v0.48.3"
 
   call GetInputs as prep {
     input:

adapter_pipelines/cellranger/adapter.wdl

@@ -150,7 +150,7 @@ workflow Adapter10xCount {
   Int max_cromwell_retries = 0
   Boolean add_md5s = false
 
-  String pipeline_tools_version = "v0.48.2"
+  String pipeline_tools_version = "v0.48.3"
 
   call GetInputs {
     input:

adapter_pipelines/ss2_single_sample/adapter.wdl

@@ -82,7 +82,7 @@ workflow AdapterSmartSeq2SingleCell{
   Int max_cromwell_retries = 0
   Boolean add_md5s = false
 
-  String pipeline_tools_version = "v0.48.2"
+  String pipeline_tools_version = "v0.48.3"
 
   call GetInputs as prep {
     input:

setup.py

@@ -18,7 +18,7 @@
           'arrow>=0.12.1',
           'google-auth>=1.6.1,<2',
           'google-cloud-storage>=1.10.0,<2',
-          'hca>=4.5.0,<5',
+          'hca>=5.1.0,<6',
           'mock>=2.0.0,<3',
           'requests>=2.20.0,<3',
           'requests-mock>=1.5.2,<2',