Fix GitHub Actions workflows and R CMD check warnings

Author: HzaCode

.Rbuildignore

@@ -100,9 +100,11 @@
 ^Athlytics_.*\.tar\.gz$
 ^tatus$
 ^check_output\.txt$
+^final_check\.txt$
+^pkgcheck.*\.txt$
+^analysis_output$
+^Athlytics$
 ^\.lang$
-^\.cursor$
-^\.cursor/
 ^.*调试.*$
 ^create_multi_athlete_sample_data\.R$
 ^regenerate_figures\.R$

.github/workflows/pkgcheck.yml

@@ -11,6 +11,9 @@ name: pkgcheck
 jobs:
   pkgcheck:
     runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      issues: write
     steps:
       - uses: actions/checkout@v4
 
@@ -27,3 +30,4 @@ jobs:
         env:
           GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
+

.github/workflows/pkgdown.yml

@@ -37,6 +37,9 @@ jobs:
         run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
         shell: Rscript {0}
 
+      - name: Create .nojekyll file
+        run: touch docs/.nojekyll
+
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
         uses: JamesIves/github-pages-deploy-action@v4.6.8