Allow compilation with Cuda 13 (#1063)

To makes cuda 13 available on Xmipp is required apart from the changes
in the CMakeList, also changes in the CUFFTAdvisor repository, to apply
it we forked the repository in I2PC https://github.com/I2PC/cuFFTAdvisor
After compilling the branch, run test related to CUDA:

- scipion3 tests
xmipp3.tests.test_protocols_xmipp_movies.TestMovieAlignmentConsensus
- scipion3 tests
xmipp3.tests.test_protocols_xmipp_movies.TestCorrelationAlignment

---------

Co-authored-by: DavidHerreros <david.herreroscalero@gmail.com>

Author: albertmena

.github/workflows/build.yml

@@ -12,7 +12,8 @@ jobs:
         - 'ubuntu-24.04'
 
         cuda:
-        - {version: '12.6.0', method: 'network'} 
+        - {version: '13.1.0', method: 'network'}
+        - {version: '12.6.0', method: 'network'}
         - {version: 'None'}
 
         compiler:

CMakeLists.txt

@@ -86,23 +86,31 @@ if(${XMIPP_USE_CUDA})
     if(CUDAToolkit_FOUND)
       file(APPEND ${XMIPP_VERSIONS_FILE} "CUDA=${CUDAToolkit_VERSION}\n")
 
-      set(CMAKE_CUDA_STANDARD 14)
+      set(CMAKE_CUDA_STANDARD 17)
 
       string(APPEND CMAKE_CUDA_FLAGS " --expt-extended-lambda")
 
-      if(CMAKE_VERSION VERSION_GREATER_EQUAL "3.18")
-        list(APPEND CMAKE_CUDA_ARCHITECTURES 60 75)
+      # 1. Define base architectures supported by almost everyone (Turing, Ampere)
+      set(XMIPP_CUDA_ARCHS 75 86)
+
+      # 2. Conditionally add Pascal (compute_60) ONLY if CUDA is older than 12.0
+      if(CMAKE_CUDA_COMPILER_VERSION VERSION_LESS_EQUAL "12.0.0")
+        list(APPEND XMIPP_CUDA_ARCHS 60)
+      endif()
 
-        if(${CUDAToolkit_VERSION} VERSION_GREATER_EQUAL "11")
-          list(APPEND CMAKE_CUDA_ARCHITECTURES 86)
-        endif()
+      # 3. Add newer architectures for CUDA 11.8+ (Ada, Hopper)
+      if(CMAKE_CUDA_COMPILER_VERSION VERSION_GREATER_EQUAL "11.8.0")
+        list(APPEND XMIPP_CUDA_ARCHS 89 90)
+      endif()
+
+      if(CMAKE_VERSION VERSION_GREATER_EQUAL "3.18")
+        # Modern CMake approach: Just pass the list
+        set(CMAKE_CUDA_ARCHITECTURES ${XMIPP_CUDA_ARCHS})
       else()
-        string(APPEND CMAKE_CUDA_FLAGS " -gencode arch=compute_60,code=sm_60")
-        string(APPEND CMAKE_CUDA_FLAGS " -gencode arch=compute_75,code=sm_75")
-        
-        if(${CUDAToolkit_VERSION} VERSION_GREATER_EQUAL "11")
-          string(APPEND CMAKE_CUDA_FLAGS " -gencode arch=compute_86,code=sm_86")
-        endif()
+        # Fallback for older CMake: Manual flags construction
+        foreach(arch ${XMIPP_CUDA_ARCHS})
+          string(APPEND CMAKE_CUDA_FLAGS " -gencode arch=compute_${arch},code=sm_${arch}")
+        endforeach()
       endif()
 
     else()

cmake/fetch_cuFFTAdvisor.cmake

@@ -30,7 +30,7 @@ function(fetch_cuFFTAdvisor)
 
 	ExternalProject_Add(
 		build_cuFFTAdvisor
-		GIT_REPOSITORY https://github.com/HiPerCoRe/cuFFTAdvisor.git
+		GIT_REPOSITORY https://github.com/I2PC/cuFFTAdvisor.git
 		GIT_TAG master
 		SOURCE_DIR ${SOURCE_DIR}
 		UPDATE_COMMAND ""