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Thesis.tex
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131 lines (114 loc) · 4.06 KB
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\documentclass[a4paper,12pt,openright]{book}
% Per gli accenti e caratteri speciali
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage[paper=a4paper,margin=1in]{geometry}
\usepackage{csquotes}
% Formule matematiche
\usepackage{amsmath, amssymb, amsfonts, latexsym, commath}
\usepackage[italian]{babel}
\usepackage{setspace}
\usepackage{listings}
\usepackage{xcolor}
\usepackage{emptypage}
% Inserimento di immagini
\usepackage{graphicx}
\graphicspath{ {./Images/} }
% Per le formule di biologia
\usepackage{xymtex}
\usepackage{wrapfig}
\usepackage{caption}
\usepackage{subcaption}
% \usepackage[lofdepth,lotdepth]{subfig}
% Link esterni e interni
\usepackage[colorlinks=true,urlcolor=black,linkcolor=black,citecolor=black]{hyperref}
\usepackage{float}
\usepackage{booktabs}
% Referenze
\usepackage{biblatex}
\usepackage{fancyhdr}
% Grafici carini
\usepackage{pgfplots}
\usepackage{tikz}
\usepackage[external]{forest}
% Renderizzo solo quando necessario, se già renderizzato
% viene incluso direttamente, velocizzando drasticamente
% il tempo di compilazione
\usetikzlibrary{external,calc,automata,chains,arrows.meta}
\usepgfplotslibrary{external}
\tikzexternalize[prefix=tikzfigures/] % activate!
% Algoritmi
\usepackage[linesnumbered,ruled,vlined]{algorithm2e}
\input{config}
\pagenumbering{roman}
\lhead{E3101Q - Informatica}
\chead{}
\rhead{}
\lfoot{Dipartimento di Informatica}
\cfoot{\thepage\ }
\rfoot{\small Università degli Studi di Milano-Bicocca}
\author{Adrian David Castro Tenemaya, 816015}
\title{Università degli Studi di Milano-Bicocca \\{\small Dipartimento di Informatica \\ Corso di Informatica - E3101Q\\A.A. 2016-2019\\\vspace*{0.55in} \ }\\ Inferenza di alberi tumorali tramite Particle Swarm Optimization \vspace*{1.25in}}
\date{\today}
%%%%%%%%%%%%%%%%
\begin{document}
%%%%%%%%%%%%%%%%
% Frontespizio da https://github.com/lucach/frontespizio-unimib
\begin{titlepage}
\noindent
\begin{minipage}[t]{0.19\textwidth}
\vspace{-4mm}{\includegraphics[scale=1.15]{logo_unimib.pdf}}
\end{minipage}
\begin{minipage}[t]{0.81\textwidth}
\setstretch{1.42}
\textsc{Università degli Studi di Milano - Bicocca} \\
\textbf{Scuola di Scienze} \\
\textbf{Dipartimento di Informatica, Sistemistica e Comunicazione} \\
\textbf{Corso di laurea in Informatica} \\
\par
\end{minipage}
\vspace{40mm}
\begin{center}
\large \setstretch{1.2}
\textbf{Inferenza di alberi tumorali tramite \\ Particle Swarm Optimization}
\par
\end{center}
\vspace{50mm}
\noindent
{\large \textbf{Relatore:} Prof. Della Vedova Gianluca } \\
\noindent
{\large \textbf{Co-relatore:} Dott. Ciccolella Simone}
\vspace{15mm}
\begin{flushright}
{\large \textbf{Relazione della prova finale di:}} \\
\large{Castro Tenemaya Adrian David} \\
\large{Matricola 816015}
\end{flushright}
\vspace{40mm}
\begin{center}
{\large{\bf Anno Accademico 2018-2019}}
\end{center}
\restoregeometry
\end{titlepage}
% \maketitle
% \makeatletter\@openrighttrue\makeatother
\newpage
\tableofcontents
% \makeatletter\@openrightfalse\makeatother
\input{Thanks}
\input{Prefazione}
\input{Abstract}
% \makeatletter\@openrighttrue\makeatother
\foreach \i in {01,02,03,04,05} {%
\edef\FileName{Chapters/chapter_\i}% The % here are necessary to eliminate any
\IfFileExists{\FileName}{% spurious spaces that may get inserted
\input{\FileName}% at these points
}
}
\listoffigures
\listoftables
\printbibliography
% In order to be able to reconstruct phylogenetic trees of tumors, in the last years the infinite-sites model has been used, assuming tumoral progressions as an accumulation of mutations. Recent studies using the single-cell sequencing technique show, highlighting the presence of mutation losses, how this assumption is not always true. However there is a lack of tools that are able to infer the phylogeny of genetic trees while allowing loss of mutations. In this work it is presented a new tool
%%%%%%%%%%%%%%
\end{document}
%%%%%%%%%%%%%%