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scripts/scripts.md

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This document outlines the utility scripts available in the repository.
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- `compute_metrics.py`
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Evaluates segmentation results by computing Dice score, Hausdorff distance, and surface distances.
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Evaluates segmentation results by computing Dice score, Hausdorff distance, and surface distances.\
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Outputs `patient_wise_metrics.csv` and aggredated `evaluation_results.csv`.
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- `convert_TCIA_to_nnunet.py`
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Converts the TCIA pediatric dataset into the nnU-Net compliant format.
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- `run_TotalSegmentator.sh`
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Executes the TotalSegmentator pipeline for baseline inference on various test sets.
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- `get_results.py`
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Processes segmentation metrics from multiple models across different datasets, performs statistical comparisons against baseline models, identifies the best-performing scores per region of interest, and outputs the results as a formatted LaTeX table.
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## Installation
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To evaluate segmentation results using `compute_metrics.py`, you need to install the `surface-distance` package. You can install it via pip:

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