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FroehlichKes2018

README.md

FroehlichKes2018

Model and data from FroehlichKes2018 https://www.cell.com/cell-systems/fulltext/S2405-4712(18)30438-1

NOTE: full dataset, not split into training and test set. Non-filtered.

Contents

  • generate_amici_model.sh

    Generate AMICI model CS_Signalling_ERBB_RAS_AKT from PEtab files

  • generate_parpe_data.sh

    Generate parPE training data HDF5 file for CS_Signalling_ERBB_RAS_AKT from PEtab files. Requires output of generate_amici_model.sh.

  • legacy-format

    CS_Signalling_ERBB_RAS_AKT in legacy format with import scripts to generate PEtab-format model and data as in PEtab/