Merge pull request #447 from dominikl/omero_zarr_pixel_buffer

Add omero-zarr-pixel-buffer to deployment

Author: sbesson

ansible/group_vars/omero-hosts.yml

@@ -19,6 +19,8 @@ idr_omero_web_release: 5.26.0
 # _omero_py_version: ==5.9.0
 
 artifactory_baseurl: "https://artifacts.openmicroscopy.org/artifactory/maven"
+glencoe_artifactory_baseurl: "https://artifacts.glencoesoftware.com/artifactory/gs-omero-snapshots-local"
+maven_artifactory_url: "https://repo1.maven.org/maven2"
 
 # list from https://github.com/IDR/deployment/pull/420#issuecomment-2173437956
 zarrreader_jars:
@@ -50,6 +52,25 @@ zarrreader_jars:
     group: ome
     version: "0.5.2"
 
+zarrpixelbuffer_jars:
+  - name: omero-zarr-pixel-buffer
+    group: com/glencoesoftware/omero
+    version: "0.4.1"
+
+zarrpixelbuffer_dep_jars:
+  - name: caffeine
+    group: com/github/ben-manes/caffeine
+    version: "3.1.8"
+  - name: jzarr
+    group: dev/zarr
+    version: "0.4.2"
+  - name: s3fs
+    group: org/lasersonlab
+    version: "2.2.3"
+  - name: aws-java-sdk-s3
+    group: com/amazonaws
+    version: "1.12.659"
+
 ice_install_devel: false
 ice_install_python: false
 # If you're using a CI build you might need to disable omego SSL verification

ansible/idr-omero-readonly.yml

@@ -223,6 +223,23 @@
       with_items: "{{ zarrreader_jars }}"
       notify: restart omero-server
 
+    - name: Override lib/server JARs (omero-zarr-pixel-buffer)
+      become: yes
+      get_url:
+        url: "{{ glencoe_artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
+        dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/{{ item.name }}.jar"
+        force: yes
+      with_items: "{{ zarrpixelbuffer_jars }}"
+
+    - name: Override lib/server JARs (dependencies of omero-zarr-pixel-buffer)
+      become: yes
+      get_url:
+        url: "{{ maven_artifactory_url }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
+        dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/{{ item.name }}.jar"
+        force: yes
+      with_items: "{{ zarrpixelbuffer_dep_jars }}"
+      notify: restart omero-server
+
     - name: Remove OMERO scripts
       become: yes
       file:

ansible/idr-omero.yml

@@ -75,7 +75,7 @@
         force: yes
       notify: restart omero-server
 
-    - name: Override lib/server JARs
+    - name: Override lib/server JARs (OMEZarrReader)
       become: yes
       get_url:
         url: "{{ artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
@@ -84,7 +84,7 @@
       with_items: "{{ zarrreader_jars }}"
       notify: restart omero-server
 
-    - name: Override lib/client JARs
+    - name: Override lib/client JARs (OMEZarrReader)
       become: yes
       get_url:
         url: "{{ artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
@@ -93,6 +93,23 @@
       with_items: "{{ zarrreader_jars }}"
       notify: restart omero-server
 
+    - name: Override lib/server JARs (omero-zarr-pixel-buffer)
+      become: yes
+      get_url:
+        url: "{{ glencoe_artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
+        dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/{{ item.name }}.jar"
+        force: yes
+      with_items: "{{ zarrpixelbuffer_jars }}"
+
+    - name: Override lib/server JARs (dependencies of omero-zarr-pixel-buffer)
+      become: yes
+      get_url:
+        url: "{{ maven_artifactory_url }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
+        dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/{{ item.name }}.jar"
+        force: yes
+      with_items: "{{ zarrpixelbuffer_dep_jars }}"
+      notify: restart omero-server
+
     - name: Remove OMERO scripts
       become: yes
       file: