Accessing bulk annotations for idr0043-uhlen-humanproteinatlas/experimentA

[hamshkhawar]

Hello, I am wondering how to access bulk annotations files for idr0043 dataset. I have found the project id of this dataset to be 501
but couldn't find the annotations files for this particular dataset. however can get an access for other project_ids. Here below I am accessing following below link
"https://idr.openmicroscopy.org/webclient/api/annotations/?type=file&project=501"

Would appreciate for any help

[dominikl]

The difference with the HPA submission (idr0043) is that the bulkannotation files are on the dataset level, not on the project level, because it's just too large. You'd have to go through the datasets and get the file from there. Hope that helps?

[dominikl]

Also note that idr0043 is not complete yet! We keep adding more datasets. That's another reason why the bulkannotations are on the dataset level.

[hamshkhawar]

Thanks for your reply. Can you please guide me how to access annotations for each dataset level programmatically?

[dominikl]

Please have a look at: https://omero-guides.readthedocs.io/en/latest/api_usage.html.
By the way, you won't be able to download image data from IDR directly. The only way to get that is via Aspera, see https://idr.openmicroscopy.org/about/download.html .