Dividing user makefile from release manager makefile, fixes #72

Author: cmungall

Makefile

@@ -81,22 +81,25 @@ realclean-%:
 # ---
 # Prefixes
 # ---
-# TODO: sync with bioregistry
-# NOTE: move this to build folder
 
-build_prefixes: $(PREFIX_DIR)/prefixes.csv
+build_prefixes: $(PREFIX_DIR)/prefixes.csv $(PREFIX_DIR)/prefixes.yaml
 
-#$(PREFIX_DIR)/obo_prefixes.owl:
-#	robot convert -I http://purl.obolibrary.org/meta/obo_prefixes.ttl -o $@
+$(PREFIX_DIR)/obo_prefixes.owl: $(STAMP)
+	robot convert -I http://purl.obolibrary.org/meta/obo_prefixes.ttl -o $@
 
-#$(PREFIX_DIR)/obo_prefixes.db: $(PREFIX_DIR)/obo_prefixes.owl
-#	sqlite3 $@ < $(PREFIX_DIR)/prefix_ddl.sql && ./bin/rdftab $@ < $<
+$(PREFIX_DIR)/obo_prefixes.db: $(PREFIX_DIR)/obo_prefixes.owl
+	sqlite3 $@ < $(PREFIX_DIR)/prefix_ddl.sql && rdftab $@ < $<
 
-#$(PREFIX_DIR)/obo_prefixes.csv: $(PREFIX_DIR)/obo_prefixes.db
-#	sqlite3 $< -cmd ".separator ','" "SELECT p.value AS prefix, ns.value AS base FROM statements AS p JOIN statements AS ns ON (p.subject=ns.subject) WHERE p.predicate='<http://www.w3.org/ns/shacl#prefix>' AND ns.predicate='<http://www.w3.org/ns/shacl#namespace>'" > $@
+$(PREFIX_DIR)/obo_prefixes.csv: $(PREFIX_DIR)/obo_prefixes.db
+	sqlite3 $< -cmd ".separator ','" "SELECT p.value AS prefix, ns.value AS base FROM statements AS p JOIN statements AS ns ON (p.subject=ns.subject) WHERE p.predicate='<http://www.w3.org/ns/shacl#prefix>' AND ns.predicate='<http://www.w3.org/ns/shacl#namespace>'" > $@
+
+$(PREFIX_DIR)/prefixes.csv: $(PREFIX_DIR)/prefixes_curated.csv $(PREFIX_DIR)/prefixes_local.csv $(PREFIX_DIR)/obo_prefixes.csv
+	cat $^ > $@
+
+# see https://github.com/INCATools/relation-graph/issues/168
+$(PREFIX_YAML_PATH): $(PREFIX_CSV_PATH)
+	grep -v ^prefix, $< | grep -v ^obo, | perl -npe 's@,(.*)@: "$$1"@'  > $@.tmp && mv $@.tmp $@
 
-#$(PREFIX_DIR)/prefixes.csv: $(PREFIX_DIR)/prefixes_curated.csv $(PREFIX_DIR)/obo_prefixes.csv#
-#	cat $^ > $@
 
 
 # ---

src/semsql/builder/build.Makefile

@@ -86,25 +86,3 @@ PREFIX_YAML_PATH = $(PREFIX_DIR)/prefixes.yaml
 %-properties.txt:
 	touch $@
 
-# ---
-# Prefixes
-# ---
-
-build_prefixes: $(PREFIX_DIR)/prefixes.csv $(PREFIX_DIR)/prefixes.yaml
-
-$(PREFIX_DIR)/obo_prefixes.owl:
-	robot convert -I http://purl.obolibrary.org/meta/obo_prefixes.ttl -o $@
-
-$(PREFIX_DIR)/obo_prefixes.db: $(PREFIX_DIR)/obo_prefixes.owl
-	sqlite3 $@ < $(PREFIX_DIR)/prefix_ddl.sql && rdftab $@ < $<
-
-$(PREFIX_DIR)/obo_prefixes.csv: $(PREFIX_DIR)/obo_prefixes.db
-	sqlite3 $< -cmd ".separator ','" "SELECT p.value AS prefix, ns.value AS base FROM statements AS p JOIN statements AS ns ON (p.subject=ns.subject) WHERE p.predicate='<http://www.w3.org/ns/shacl#prefix>' AND ns.predicate='<http://www.w3.org/ns/shacl#namespace>'" > $@
-
-$(PREFIX_DIR)/prefixes.csv: $(PREFIX_DIR)/prefixes_curated.csv $(PREFIX_DIR)/prefixes_local.csv $(PREFIX_DIR)/obo_prefixes.csv
-	cat $^ > $@
-
-# see https://github.com/INCATools/relation-graph/issues/168
-$(PREFIX_YAML_PATH): $(PREFIX_CSV_PATH)
-	grep -v ^prefix, $< | grep -v ^obo, | perl -npe 's@,(.*)@: "$$1"@'  > $@.tmp && mv $@.tmp $@
-