diff --git a/dvc.lock b/dvc.lock index bbeb7ed..aef38a7 100644 --- a/dvc.lock +++ b/dvc.lock @@ -27264,7 +27264,7 @@ stages: depl_Packmol_1: box: count: - - 16 + - 8 data_ids: density: 900 pbc: true @@ -27272,16 +27272,16 @@ stages: outs: - path: nodes/depl/Packmol_1/atoms.h5 hash: md5 - md5: 7ec77fd6549c61434a9b28b7715027a8 - size: 43328 + md5: 3cd76ae11c9131c8a7f01264bf5946e4 + size: 35776 - path: nodes/depl/Packmol_1/node-meta.json hash: md5 - md5: 4dab86e07acb5e1b620a83587ef489a4 + md5: 80dabde8b89e486c3773d3aca7a3d312 size: 48 - path: nodes/depl/Packmol_1/packmol hash: md5 - md5: ac2a1f78e24d4acec487ee8d320e3c86.dir - size: 28854 + md5: 841037c7ba3625d833250e20c6e49d0e.dir + size: 15413 nfiles: 3 depl_ASEGeoOpt: cmd: zntrack run ipsuite.nodes.ASEGeoOpt --name depl_ASEGeoOpt @@ -27313,16 +27313,16 @@ stages: size: 8933596 - path: nodes/depl/Packmol_1/atoms.h5 hash: md5 - md5: 7ec77fd6549c61434a9b28b7715027a8 - size: 43328 + md5: 3cd76ae11c9131c8a7f01264bf5946e4 + size: 35776 - path: nodes/depl/Packmol_1/node-meta.json hash: md5 - md5: 4dab86e07acb5e1b620a83587ef489a4 + md5: 80dabde8b89e486c3773d3aca7a3d312 size: 48 - path: nodes/depl/Packmol_1/packmol hash: md5 - md5: ac2a1f78e24d4acec487ee8d320e3c86.dir - size: 28854 + md5: 841037c7ba3625d833250e20c6e49d0e.dir + size: 15413 nfiles: 3 params: params.yaml: @@ -27345,12 +27345,12 @@ stages: nfiles: 1 - path: nodes/depl/ASEGeoOpt/node-meta.json hash: md5 - md5: fe39d4aaaae596691bf44639f50031f0 + md5: 36fdc339e9cbc81381dd8000db1356c6 size: 48 - path: nodes/depl/ASEGeoOpt/trajectory.h5 hash: md5 - md5: 983b66b57f7c4f7f7e5d9043e0e0f8e4 - size: 6554344 + md5: a58c4aec8c6dba111ab6e9a6d847ea8c + size: 6435000 depl_ASEMD: cmd: zntrack run ipsuite.nodes.ASEMD --name depl_ASEMD deps: @@ -27386,12 +27386,12 @@ stages: nfiles: 1 - path: nodes/depl/ASEGeoOpt/node-meta.json hash: md5 - md5: fe39d4aaaae596691bf44639f50031f0 + md5: 36fdc339e9cbc81381dd8000db1356c6 size: 48 - path: nodes/depl/ASEGeoOpt/trajectory.h5 hash: md5 - md5: 983b66b57f7c4f7f7e5d9043e0e0f8e4 - size: 6554344 + md5: a58c4aec8c6dba111ab6e9a6d847ea8c + size: 6435000 params: params.yaml: depl_ASEMD: @@ -27417,8 +27417,8 @@ stages: outs: - path: nodes/depl/ASEMD/metrics_dict.csv hash: md5 - md5: f9992334b6865f16209f99bdbba68f53 - size: 42098 + md5: 2e3612e4d85842d951c4e6c262f4fd2a + size: 42095 - path: nodes/depl/ASEMD/model hash: md5 md5: 64586897446153f477c052dd0e2579ad.dir @@ -27426,16 +27426,16 @@ stages: nfiles: 1 - path: nodes/depl/ASEMD/node-meta.json hash: md5 - md5: cf2e267d8703152694ec822e5024d479 - size: 64 + md5: 0b8b6c28f1167cb55b3aea056ea09071 + size: 48 - path: nodes/depl/ASEMD/steps_before_stopping.json hash: md5 md5: 6bb61e3b7bce0931da574d19d1d82c88 size: 2 - path: nodes/depl/ASEMD/trajectory.h5 hash: md5 - md5: 690f620a32436711fdbee04f66286a61 - size: 50790792 + md5: c28a836ee5dd4714930978ee82e93047 + size: 25409160 depl_ASEMD_1: cmd: zntrack run ipsuite.nodes.ASEMD --name depl_ASEMD_1 deps: @@ -27466,8 +27466,8 @@ stages: size: 8933596 - path: nodes/depl/ASEMD/metrics_dict.csv hash: md5 - md5: f9992334b6865f16209f99bdbba68f53 - size: 42098 + md5: 2e3612e4d85842d951c4e6c262f4fd2a + size: 42095 - path: nodes/depl/ASEMD/model hash: md5 md5: 64586897446153f477c052dd0e2579ad.dir @@ -27475,16 +27475,16 @@ stages: nfiles: 1 - path: nodes/depl/ASEMD/node-meta.json hash: md5 - md5: cf2e267d8703152694ec822e5024d479 - size: 64 + md5: 0b8b6c28f1167cb55b3aea056ea09071 + size: 48 - path: nodes/depl/ASEMD/steps_before_stopping.json hash: md5 md5: 6bb61e3b7bce0931da574d19d1d82c88 size: 2 - path: nodes/depl/ASEMD/trajectory.h5 hash: md5 - md5: 690f620a32436711fdbee04f66286a61 - size: 50790792 + md5: c28a836ee5dd4714930978ee82e93047 + size: 25409160 params: params.yaml: depl_ASEMD_1: @@ -27507,8 +27507,8 @@ stages: outs: - path: nodes/depl/ASEMD_1/metrics_dict.csv hash: md5 - md5: 070e36f16a3f963b3efa4452bf6a8c9a - size: 41987 + md5: aad9a957aff8a2d9dc0c91f20354cb07 + size: 41969 - path: nodes/depl/ASEMD_1/model hash: md5 md5: 64586897446153f477c052dd0e2579ad.dir @@ -27516,16 +27516,16 @@ stages: nfiles: 1 - path: nodes/depl/ASEMD_1/node-meta.json hash: md5 - md5: 23c29f3c178061396f58c035aa14e466 - size: 64 + md5: 64c26edba514b68cf29057d3a0261503 + size: 48 - path: nodes/depl/ASEMD_1/steps_before_stopping.json hash: md5 md5: 6bb61e3b7bce0931da574d19d1d82c88 size: 2 - path: nodes/depl/ASEMD_1/trajectory.h5 hash: md5 - md5: 0dc924b787779e5f2ceed102dbff1cb1 - size: 50790792 + md5: e07f0f22de124702a889ecf0ffee28ce + size: 25409160 ML17_training_MLModel_4: cmd: zntrack run ipsuite.nodes.Apax --name ML17_training_MLModel_4 deps: @@ -27813,8 +27813,8 @@ stages: size: 8933596 - path: nodes/depl/ASEMD_1/metrics_dict.csv hash: md5 - md5: d205750be5ae46c161407aebe9acd95f - size: 41997 + md5: aad9a957aff8a2d9dc0c91f20354cb07 + size: 41969 - path: nodes/depl/ASEMD_1/model hash: md5 md5: 64586897446153f477c052dd0e2579ad.dir @@ -27822,16 +27822,16 @@ stages: nfiles: 1 - path: nodes/depl/ASEMD_1/node-meta.json hash: md5 - md5: e078a456bc04af626027522a906aa7bd - size: 64 + md5: 64c26edba514b68cf29057d3a0261503 + size: 48 - path: nodes/depl/ASEMD_1/steps_before_stopping.json hash: md5 md5: 6bb61e3b7bce0931da574d19d1d82c88 size: 2 - path: nodes/depl/ASEMD_1/trajectory.h5 hash: md5 - md5: 6af08c94d13be72cd0c15478087ff4cb - size: 50790792 + md5: e07f0f22de124702a889ecf0ffee28ce + size: 25409160 params: params.yaml: depl_ApaxJaxMD: @@ -27846,20 +27846,20 @@ stages: ensemble: name: nvt dt: 0.5 - temperature: 333 + temperature: 293 n_inner: 5000 sampling_rate: 200 outs: - path: nodes/depl/ApaxJaxMD/initial_structure.extxyz hash: md5 - md5: 8b1cf3ce64664a86afac689c3fec0ac6 - size: 50544 + md5: 6c1d89b7386d8b4fc9ef034de3ee8278 + size: 25350 - path: nodes/depl/ApaxJaxMD/md hash: md5 - md5: 9978465ba172e09f104267144a6d1b4b.dir - size: 8168584398 + md5: 6a9cfdbf6e850054c064bcc598919cad.dir + size: 4115102461 nfiles: 6 - path: nodes/depl/ApaxJaxMD/node-meta.json hash: md5 - md5: ca4a4f3af6307c39a449e786ae2bbe2e - size: 64 + md5: eefdac810acc3fa7f1d909eb3bc8a679 + size: 48 diff --git a/main.py b/main.py index f83bb13..9956ba2 100644 --- a/main.py +++ b/main.py @@ -959,7 +959,7 @@ structure = ips.configuration_generation.Packmol( data=[single_structure.atoms], - count=[16], # 16, 32, 64 + count=[8], # 16, 32, 64 density=900, ) diff --git a/nodes/depl/ASEGeoOpt/node-meta.json b/nodes/depl/ASEGeoOpt/node-meta.json index b49e633..0d03bf5 100644 --- a/nodes/depl/ASEGeoOpt/node-meta.json +++ b/nodes/depl/ASEGeoOpt/node-meta.json @@ -1 +1 @@ -{"uuid": "0d584356-51f5-4a5f-ace8-5a4c3eaacc1f"} \ No newline at end of file +{"uuid": "a707b589-6ebe-4c49-a821-bd723cd518c9"} \ No newline at end of file diff --git a/nodes/depl/ASEMD/node-meta.json b/nodes/depl/ASEMD/node-meta.json index 49bd4fa..0dc05c0 100644 --- a/nodes/depl/ASEMD/node-meta.json +++ b/nodes/depl/ASEMD/node-meta.json @@ -1 +1 @@ -{"uuid": "5cdcbcd3-d5bd-4f53-ac68-784f7cebab59", "run_count": 1} \ No newline at end of file +{"uuid": "a62455e0-4a37-4fe4-80a4-392f0ee10db2"} \ No newline at end of file diff --git a/nodes/depl/ASEMD_1/node-meta.json b/nodes/depl/ASEMD_1/node-meta.json index b63485f..bbe2a8c 100644 --- a/nodes/depl/ASEMD_1/node-meta.json +++ b/nodes/depl/ASEMD_1/node-meta.json @@ -1 +1 @@ -{"uuid": "636c3ae9-1574-48e7-b538-c7f4b22ad9e6", "run_count": 1} \ No newline at end of file +{"uuid": "3bb7a075-55b8-4b26-8ac6-71e126cf3669"} \ No newline at end of file diff --git a/nodes/depl/ApaxJaxMD/node-meta.json b/nodes/depl/ApaxJaxMD/node-meta.json index bc46e84..1f156d1 100644 --- a/nodes/depl/ApaxJaxMD/node-meta.json +++ b/nodes/depl/ApaxJaxMD/node-meta.json @@ -1 +1 @@ -{"uuid": "d77a44fe-b51a-41fa-81fa-46715ffc4d92", "run_count": 3} \ No newline at end of file +{"uuid": "3202af26-c507-42be-8283-ed040412e9a5"} \ No newline at end of file diff --git a/nodes/depl/Packmol_1/node-meta.json b/nodes/depl/Packmol_1/node-meta.json index b1bd775..52b6d1e 100644 --- a/nodes/depl/Packmol_1/node-meta.json +++ b/nodes/depl/Packmol_1/node-meta.json @@ -1 +1 @@ -{"uuid": "12b972d9-3c62-4873-a260-c2a25705c182"} \ No newline at end of file +{"uuid": "bd337b66-ce3e-4e40-8712-c1129be1ec42"} \ No newline at end of file diff --git a/params.yaml b/params.yaml index 0481aaf..3930f9c 100644 --- a/params.yaml +++ b/params.yaml @@ -1296,7 +1296,7 @@ depl_Packmol: depl_Packmol_1: box: null count: - - 16 + - 8 data_ids: null density: 900 pbc: true diff --git a/submit_ehlers.sh b/submit_ehlers.sh new file mode 100644 index 0000000..76b0bf0 --- /dev/null +++ b/submit_ehlers.sh @@ -0,0 +1,14 @@ +#!/bin/bash +#SBATCH --partition=dgx +#SBATCH --ntasks=1 +#SBATCH --cpus-per-task=8 +#SBATCH --time=12:00:00 +#SBATCH --gres=gpu:1 +#SBATCH --mem=32gb +#SBATCH --job-name=293K-8Pairs + +source ~/.bashrc +conda activate ips + +# dvc repro +zntrack run ipsuite.nodes.ApaxJaxMD --name depl_ApaxJaxMD