diff --git a/dvc.lock b/dvc.lock index 33103e2..6bb2035 100644 --- a/dvc.lock +++ b/dvc.lock @@ -27232,15 +27232,15 @@ stages: outs: - path: nodes/depl/Packmol/atoms.h5 hash: md5 - md5: 2400ddfca5ec50ebe880626f190e0797 + md5: 39380ec230e5378714d338776da9e790 size: 27968 - path: nodes/depl/Packmol/node-meta.json hash: md5 - md5: 183c2b460f416178653dc0ea9b0a9fdd + md5: 5e0b2cfcda800b14b1e0b713d8909146 size: 48 - path: nodes/depl/Packmol/packmol hash: md5 - md5: 9211f580932fa95a1d122b0e2be6699c.dir + md5: c8b3e52f00edc5172826bf4a3cbc7a42.dir size: 3841 nfiles: 4 depl_Packmol_1: @@ -27248,15 +27248,15 @@ stages: deps: - path: nodes/depl/Packmol/atoms.h5 hash: md5 - md5: 2400ddfca5ec50ebe880626f190e0797 + md5: 39380ec230e5378714d338776da9e790 size: 27968 - path: nodes/depl/Packmol/node-meta.json hash: md5 - md5: 183c2b460f416178653dc0ea9b0a9fdd + md5: 5e0b2cfcda800b14b1e0b713d8909146 size: 48 - path: nodes/depl/Packmol/packmol hash: md5 - md5: 9211f580932fa95a1d122b0e2be6699c.dir + md5: c8b3e52f00edc5172826bf4a3cbc7a42.dir size: 3841 nfiles: 4 params: @@ -27264,7 +27264,7 @@ stages: depl_Packmol_1: box: count: - - 16 + - 8 data_ids: density: 900 pbc: true @@ -27272,16 +27272,16 @@ stages: outs: - path: nodes/depl/Packmol_1/atoms.h5 hash: md5 - md5: 7ec77fd6549c61434a9b28b7715027a8 - size: 43328 + md5: 34cf04ddb4032de238ea34596aaa1960 + size: 35776 - path: nodes/depl/Packmol_1/node-meta.json hash: md5 - md5: 4dab86e07acb5e1b620a83587ef489a4 + md5: fb6ded561e00da1722e0da7c2cba15b0 size: 48 - path: nodes/depl/Packmol_1/packmol hash: md5 - md5: ac2a1f78e24d4acec487ee8d320e3c86.dir - size: 28854 + md5: 565b6debcb6531b1fc75a04f6aedc040.dir + size: 15413 nfiles: 3 depl_ASEGeoOpt: cmd: zntrack run ipsuite.nodes.ASEGeoOpt --name depl_ASEGeoOpt @@ -27313,16 +27313,16 @@ stages: size: 8933596 - path: nodes/depl/Packmol_1/atoms.h5 hash: md5 - md5: 7ec77fd6549c61434a9b28b7715027a8 - size: 43328 + md5: 34cf04ddb4032de238ea34596aaa1960 + size: 35776 - path: nodes/depl/Packmol_1/node-meta.json hash: md5 - md5: 4dab86e07acb5e1b620a83587ef489a4 + md5: fb6ded561e00da1722e0da7c2cba15b0 size: 48 - path: nodes/depl/Packmol_1/packmol hash: md5 - md5: ac2a1f78e24d4acec487ee8d320e3c86.dir - size: 28854 + md5: 565b6debcb6531b1fc75a04f6aedc040.dir + size: 15413 nfiles: 3 params: params.yaml: @@ -27345,12 +27345,12 @@ stages: nfiles: 1 - path: nodes/depl/ASEGeoOpt/node-meta.json hash: md5 - md5: fe39d4aaaae596691bf44639f50031f0 + md5: 4f8d82e5d777b0715c7a4bd0d3cbeffc size: 48 - path: nodes/depl/ASEGeoOpt/trajectory.h5 hash: md5 - md5: 983b66b57f7c4f7f7e5d9043e0e0f8e4 - size: 6554344 + md5: 67203a958e889ff5f9bae5ab7fcbce2d + size: 9719256 depl_ASEMD: cmd: zntrack run ipsuite.nodes.ASEMD --name depl_ASEMD deps: @@ -27386,12 +27386,12 @@ stages: nfiles: 1 - path: nodes/depl/ASEGeoOpt/node-meta.json hash: md5 - md5: fe39d4aaaae596691bf44639f50031f0 + md5: 4f8d82e5d777b0715c7a4bd0d3cbeffc size: 48 - path: nodes/depl/ASEGeoOpt/trajectory.h5 hash: md5 - md5: 983b66b57f7c4f7f7e5d9043e0e0f8e4 - size: 6554344 + md5: 67203a958e889ff5f9bae5ab7fcbce2d + size: 9719256 params: params.yaml: depl_ASEMD: @@ -27417,8 +27417,8 @@ stages: outs: - path: nodes/depl/ASEMD/metrics_dict.csv hash: md5 - md5: 983d17a2cde8d650b5cd0dd9f90e59f2 - size: 42017 + md5: 7667aa5831eafcdc7936f9833270fb6a + size: 41999 - path: nodes/depl/ASEMD/model hash: md5 md5: 64586897446153f477c052dd0e2579ad.dir @@ -27426,16 +27426,16 @@ stages: nfiles: 1 - path: nodes/depl/ASEMD/node-meta.json hash: md5 - md5: 547a6e5066b6f5faab48d9656cdd68b0 - size: 64 + md5: 15ce8ca94939f782f3c9a30ada653ce2 + size: 48 - path: nodes/depl/ASEMD/steps_before_stopping.json hash: md5 md5: 6bb61e3b7bce0931da574d19d1d82c88 size: 2 - path: nodes/depl/ASEMD/trajectory.h5 hash: md5 - md5: 0486da66cab9852204d102f0209fe6ce - size: 50790792 + md5: 3e8975e4bfbf2025a0ac600f10ae3687 + size: 25409160 depl_ASEMD_1: cmd: zntrack run ipsuite.nodes.ASEMD --name depl_ASEMD_1 deps: @@ -27466,8 +27466,8 @@ stages: size: 8933596 - path: nodes/depl/ASEMD/metrics_dict.csv hash: md5 - md5: 983d17a2cde8d650b5cd0dd9f90e59f2 - size: 42017 + md5: 7667aa5831eafcdc7936f9833270fb6a + size: 41999 - path: nodes/depl/ASEMD/model hash: md5 md5: 64586897446153f477c052dd0e2579ad.dir @@ -27475,16 +27475,16 @@ stages: nfiles: 1 - path: nodes/depl/ASEMD/node-meta.json hash: md5 - md5: 547a6e5066b6f5faab48d9656cdd68b0 - size: 64 + md5: 15ce8ca94939f782f3c9a30ada653ce2 + size: 48 - path: nodes/depl/ASEMD/steps_before_stopping.json hash: md5 md5: 6bb61e3b7bce0931da574d19d1d82c88 size: 2 - path: nodes/depl/ASEMD/trajectory.h5 hash: md5 - md5: 0486da66cab9852204d102f0209fe6ce - size: 50790792 + md5: 3e8975e4bfbf2025a0ac600f10ae3687 + size: 25409160 params: params.yaml: depl_ASEMD_1: @@ -27507,8 +27507,8 @@ stages: outs: - path: nodes/depl/ASEMD_1/metrics_dict.csv hash: md5 - md5: 35ad797b779589a3b5078a59bbfdaa97 - size: 41989 + md5: 38f06330fa7f29646f302d94fad17d75 + size: 41969 - path: nodes/depl/ASEMD_1/model hash: md5 md5: 64586897446153f477c052dd0e2579ad.dir @@ -27516,16 +27516,16 @@ stages: nfiles: 1 - path: nodes/depl/ASEMD_1/node-meta.json hash: md5 - md5: 1726952160edcfcd21c10afce4e9838c - size: 64 + md5: 21952312416e2f30cc7836cc7011934b + size: 48 - path: nodes/depl/ASEMD_1/steps_before_stopping.json hash: md5 md5: 6bb61e3b7bce0931da574d19d1d82c88 size: 2 - path: nodes/depl/ASEMD_1/trajectory.h5 hash: md5 - md5: 7ae71e49129b96fce45aef46689fc2af - size: 50790792 + md5: fed9ed12c153338ed91e19e139f585c8 + size: 25409160 ML17_training_MLModel_4: cmd: zntrack run ipsuite.nodes.Apax --name ML17_training_MLModel_4 deps: @@ -27813,8 +27813,8 @@ stages: size: 8933596 - path: nodes/depl/ASEMD_1/metrics_dict.csv hash: md5 - md5: 35ad797b779589a3b5078a59bbfdaa97 - size: 41989 + md5: 38f06330fa7f29646f302d94fad17d75 + size: 41969 - path: nodes/depl/ASEMD_1/model hash: md5 md5: 64586897446153f477c052dd0e2579ad.dir @@ -27822,16 +27822,16 @@ stages: nfiles: 1 - path: nodes/depl/ASEMD_1/node-meta.json hash: md5 - md5: 1726952160edcfcd21c10afce4e9838c - size: 64 + md5: 21952312416e2f30cc7836cc7011934b + size: 48 - path: nodes/depl/ASEMD_1/steps_before_stopping.json hash: md5 md5: 6bb61e3b7bce0931da574d19d1d82c88 size: 2 - path: nodes/depl/ASEMD_1/trajectory.h5 hash: md5 - md5: 7ae71e49129b96fce45aef46689fc2af - size: 50790792 + md5: fed9ed12c153338ed91e19e139f585c8 + size: 25409160 params: params.yaml: depl_ApaxJaxMD: @@ -27852,14 +27852,14 @@ stages: outs: - path: nodes/depl/ApaxJaxMD/initial_structure.extxyz hash: md5 - md5: fc771cb638ca56a79d07ce3218ce0f0a - size: 50547 + md5: 16b46396e82c8f39bd6006d4524e1252 + size: 25347 - path: nodes/depl/ApaxJaxMD/md hash: md5 - md5: ea658d6fc6eb15b4dfd04b05014e1623.dir - size: 7722462227 + md5: 0fc8c0fe53570ae252197552e148dacc.dir + size: 4239550354 nfiles: 6 - path: nodes/depl/ApaxJaxMD/node-meta.json hash: md5 - md5: 22a73482bec976bda5099f57c3daa1ce - size: 64 + md5: bb623661d4a74a71202f4ef5e532dab9 + size: 48 diff --git a/main.py b/main.py index df4b75f..26ecc40 100644 --- a/main.py +++ b/main.py @@ -959,7 +959,7 @@ structure = ips.configuration_generation.Packmol( data=[single_structure.atoms], - count=[16], # 16, 32, 64 + count=[8], # 16, 32, 64 density=900, ) @@ -1002,4 +1002,4 @@ project.build(nodes=[depl]) -# pip uninstall jax jaxlib nvidia-nvtx-cu12 nvidia-nccl-cu12 nvidia-nvjitlink-cu12 nvidia-cusparse-cu12 nvidia-cublas-cu12 nvidia-cuda-cupti-cu12 nvidia-cuda-nvcc-cu12 nvidia-cuda-nvrtc-cu12 nvidia-cuda-runtime-cu12 nvidia-cudnn-cu12 nvidia-cufft-cu12 nvidia-curand-cu12 nvidia-cusolver-cu12 \ No newline at end of file +# pip uninstall jax jaxlib nvidia-nvtx-cu12 nvidia-nccl-cu12 nvidia-nvjitlink-cu12 nvidia-cusparse-cu12 nvidia-cublas-cu12 nvidia-cuda-cupti-cu12 nvidia-cuda-nvcc-cu12 nvidia-cuda-nvrtc-cu12 nvidia-cuda-runtime-cu12 nvidia-cudnn-cu12 nvidia-cufft-cu12 nvidia-curand-cu12 nvidia-cusolver-cu12 diff --git a/nodes/depl/ASEGeoOpt/node-meta.json b/nodes/depl/ASEGeoOpt/node-meta.json index b49e633..95818b5 100644 --- a/nodes/depl/ASEGeoOpt/node-meta.json +++ b/nodes/depl/ASEGeoOpt/node-meta.json @@ -1 +1 @@ -{"uuid": "0d584356-51f5-4a5f-ace8-5a4c3eaacc1f"} \ No newline at end of file +{"uuid": "9839dd5f-732e-4533-aed7-a467dc0d6aaa"} \ No newline at end of file diff --git a/nodes/depl/ASEMD/node-meta.json b/nodes/depl/ASEMD/node-meta.json index 79f5b0c..3474c0b 100644 --- a/nodes/depl/ASEMD/node-meta.json +++ b/nodes/depl/ASEMD/node-meta.json @@ -1 +1 @@ -{"uuid": "6718a1e1-ffcd-4291-b487-436f21b3e9f4", "run_count": 1} \ No newline at end of file +{"uuid": "43e7a5e2-cf35-4b8c-b78f-0b6f7a6ebd02"} \ No newline at end of file diff --git a/nodes/depl/ASEMD_1/node-meta.json b/nodes/depl/ASEMD_1/node-meta.json index 1615ce6..b0e6909 100644 --- a/nodes/depl/ASEMD_1/node-meta.json +++ b/nodes/depl/ASEMD_1/node-meta.json @@ -1 +1 @@ -{"uuid": "6cb887a6-6c62-4edc-8471-edaa963ffaf4", "run_count": 1} \ No newline at end of file +{"uuid": "0536ba9f-2984-4ccf-8b71-afcce80bd8f5"} \ No newline at end of file diff --git a/nodes/depl/ApaxJaxMD/node-meta.json b/nodes/depl/ApaxJaxMD/node-meta.json index f97b401..49c2207 100644 --- a/nodes/depl/ApaxJaxMD/node-meta.json +++ b/nodes/depl/ApaxJaxMD/node-meta.json @@ -1 +1 @@ -{"uuid": "43998d26-aec1-481d-9cd6-55bf6c0515d3", "run_count": 1} \ No newline at end of file +{"uuid": "f44d518d-6b07-4262-991f-8a70f5c961c8"} \ No newline at end of file diff --git a/nodes/depl/Packmol/node-meta.json b/nodes/depl/Packmol/node-meta.json index c420b06..ec9a8ac 100644 --- a/nodes/depl/Packmol/node-meta.json +++ b/nodes/depl/Packmol/node-meta.json @@ -1 +1 @@ -{"uuid": "c1b8c707-89b9-444f-892d-2f173a8bad8d"} \ No newline at end of file +{"uuid": "701891fe-faeb-4b38-b3bf-547af9ad7754"} \ No newline at end of file diff --git a/nodes/depl/Packmol_1/node-meta.json b/nodes/depl/Packmol_1/node-meta.json index b1bd775..cb919d5 100644 --- a/nodes/depl/Packmol_1/node-meta.json +++ b/nodes/depl/Packmol_1/node-meta.json @@ -1 +1 @@ -{"uuid": "12b972d9-3c62-4873-a260-c2a25705c182"} \ No newline at end of file +{"uuid": "8b9c1ff8-161e-4a6f-b0fd-b437101eed86"} \ No newline at end of file diff --git a/params.yaml b/params.yaml index 2fd73d5..ec68f3d 100644 --- a/params.yaml +++ b/params.yaml @@ -1296,7 +1296,7 @@ depl_Packmol: depl_Packmol_1: box: null count: - - 16 + - 8 data_ids: null density: 900 pbc: true diff --git a/submit_cpu.sh b/submit_cpu.sh deleted file mode 100644 index 57aa00b..0000000 --- a/submit_cpu.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/bash -#SBATCH --partition=cpu-multi -#SBATCH --ntasks=32 -#SBATCH --cpus-per-task=8 -#SBATCH --time=16:00:00 -#SBATCH --mem=32gb - -source ~/.bashrc - -export OMP_NUM_THREADS=${SLURM_CPUS_PER_TASK} -export IPSUITE_CP2K_SHELL="mpirun -n ${SLURM_NTASKS} cp2k_shell.psmp" - -module load compiler/gnu -module load mpi/openmpi -conda activate ips_jax - -dvc repro diff --git a/submit_ehlers.sh b/submit_ehlers.sh new file mode 100644 index 0000000..7d36202 --- /dev/null +++ b/submit_ehlers.sh @@ -0,0 +1,14 @@ +#!/bin/bash +#SBATCH --partition=dgx +#SBATCH --ntasks=1 +#SBATCH --cpus-per-task=8 +#SBATCH --time=12:00:00 +#SBATCH --gres=gpu:1 +#SBATCH --mem=32gb +#SBATCH --job-name=313K-8Pairs + +source ~/.bashrc +conda activate ips + +# dvc repro +zntrack run ipsuite.nodes.ApaxJaxMD --name depl_ApaxJaxMD diff --git a/submit_gpu.sh b/submit_gpu.sh deleted file mode 100644 index 619733a..0000000 --- a/submit_gpu.sh +++ /dev/null @@ -1,18 +0,0 @@ -#!/bin/bash -#SBATCH --partition=single -#SBATCH --ntasks=1 -#SBATCH --cpus-per-task=1 -#SBATCH --time=02:00:00 -#SBATCH --gres=gpu:1 -#SBATCH --mem=8gb - -source ~/.bashrc - -export OMP_NUM_THREADS=${SLURM_CPUS_PER_TASK} -export IPSUITE_CP2K_SHELL="mpirun -n ${SLURM_NTASKS} cp2k_shell.psmp" - -module load compiler/gnu -module load mpi/openmpi -conda activate ips_apax - -dvc repro \ No newline at end of file diff --git a/submit_single_multi.sh b/submit_single_multi.sh deleted file mode 100644 index 87a6b1e..0000000 --- a/submit_single_multi.sh +++ /dev/null @@ -1,18 +0,0 @@ -#!/bin/bash -#SBATCH --partition=single -#SBATCH --ntasks=8 -#SBATCH --cpus-per-task=4 -#SBATCH --time=120:00:00 -#SBATCH --gres=gpu:1 -#SBATCH --mem=32gb - -source ~/.bashrc - -export OMP_NUM_THREADS=${SLURM_CPUS_PER_TASK} -export IPSUITE_CP2K_SHELL="mpirun -n ${SLURM_NTASKS} cp2k_shell.psmp" - -module load compiler/gnu -module load mpi/openmpi -conda activate ips_apax - -dvc repro