diff --git a/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md
similarity index 100%
rename from PULL_REQUEST_TEMPLATE.md
rename to .github/PULL_REQUEST_TEMPLATE.md
diff --git a/Jenkinsfile b/Jenkinsfile
deleted file mode 100644
index 3dd5a257..00000000
--- a/Jenkinsfile
+++ /dev/null
@@ -1,121 +0,0 @@
-#!groovy
-
-pipeline {
-
-  // agent defines where the pipeline will run.
-  agent {  
-    label {
-      label "genie"
-    }
-  }
-  
-  environment {
-      NODE = "${env.NODE_NAME}"
-      PLOCK = "python_${NODE}"
-  }
-  
-  triggers {
-    pollSCM('H/2 * * * *')
-  }
-
-  // The options directive is for configuration that applies to the whole job.
-  options {
-    buildDiscarder(logRotator(numToKeepStr:'5', daysToKeepStr: '7'))
-    disableConcurrentBuilds()
-    timestamps()
-    office365ConnectorWebhooks([[
-                    name: "Office 365",
-                    notifyBackToNormal: true,
-                    startNotification: false,
-                    notifyFailure: true,
-                    notifySuccess: false,
-                    notifyNotBuilt: false,
-                    notifyAborted: false,
-                    notifyRepeatedFailure: true,
-                    notifyUnstable: true,
-                    url: "${env.MSTEAMS_URL}"
-            ]]
-    )
-  }
-
-  stages {  
-    stage("Checkout") {
-      steps {
-        timeout(time: 2, unit: 'HOURS') {
-          retry(5) {
-            echo "Branch: ${env.BRANCH_NAME}"
-            checkout scm
-          }
-        }
-      }
-   }
-    
-    stage("Build for Python 3") {
-      steps {
-        echo "Build Number: ${env.BUILD_NUMBER}"
-        lock(resource: PLOCK, inversePrecedence: false) {
-        timeout(time: 120, unit: 'MINUTES') {
-        script {
-            env.GIT_COMMIT = bat(returnStdout: true, script: '@git rev-parse HEAD').trim()
-            env.GIT_BRANCH = bat(returnStdout: true, script: '@git rev-parse --abbrev-ref HEAD').trim()
-            echo "git commit: ${env.GIT_COMMIT}"
-            echo "git branch: ${env.BRANCH_NAME} ${env.GIT_BRANCH}"
-            // env.BRANCH_NAME is only supplied to multi-branch pipeline jobs
-            if (env.BRANCH_NAME == null) {
-                env.BRANCH_NAME = "master"
-            }
-
-            if (env.BRANCH_NAME != null && env.BRANCH_NAME.startsWith("Release")) {
-                env.IS_RELEASE = "YES"
-                env.RELEASE_VERSION = "${env.BRANCH_NAME}".replace('Release_', '')
-                echo "release version: ${env.RELEASE_VERSION}"
-            }
-            else {
-                env.IS_RELEASE = "NO"
-                env.RELEASE_VERSION = ""
-            }
-        }
-        bat """
-            git clean -fqdx
-            set BUILD_NUMBER=${env.BUILD_NUMBER}
-            set BRANCH_NAME=${env.BRANCH_NAME}
-            set GIT_COMMIT=${env.GIT_COMMIT}
-            set RELEASE_BRANCH=${env.RELEASE_VERSION}
-            set RELEASE=${env.IS_RELEASE}
-            cd package_builder
-            jenkins_build_python.bat 3
-            """
-        }
-        }
-      }
-    }
-    stage("Report Unit Tests python 3") {
-      steps {
-        junit '**/test-reports/TEST-*.xml'
-      }
-   }
-    stage("Trigger Downstream") {
-      steps {
-        build job: 'ibex_gui_pipeline', wait: false
-      }
-    }
-  }
-  post {
-    cleanup {
-            echo "***"
-            echo "*** Any Office365connector Matched status FAILURE message below means"
-            echo "*** an earlier Jenkins step failed not the Office365connector itself"
-            echo "*** Search log file for  ERROR  to locate true cause"
-            echo "***"
-    }
-    always {
-        logParser ([
-                projectRulePath: 'parse_rules',
-                parsingRulesPath: '',
-                showGraphs: true,
-                unstableOnWarning: false,
-                useProjectRule: true,
-            ])
-    }
-  }
-}
diff --git a/Jenkinsfile_linux b/Jenkinsfile_linux
deleted file mode 100644
index a882d0ef..00000000
--- a/Jenkinsfile_linux
+++ /dev/null
@@ -1,97 +0,0 @@
-#!groovy
-
-pipeline {
-
-  // agent defines where the pipeline will run.
-  agent {  
-    label {
-      label "sl7cloud"
-    }
-  }
-  
-  triggers {
-    pollSCM('H/2 * * * *')
-  }
-
-  // The options directive is for configuration that applies to the whole job.
-  options {
-    buildDiscarder(logRotator(numToKeepStr:'5', daysToKeepStr: '7'))
-    timeout(time: 60, unit: 'MINUTES')
-    disableConcurrentBuilds()
-    timestamps()
-    office365ConnectorWebhooks([[
-                    name: "Office 365",
-                    notifyBackToNormal: true,
-                    startNotification: false,
-                    notifyFailure: true,
-                    notifySuccess: false,
-                    notifyNotBuilt: false,
-                    notifyAborted: false,
-                    notifyRepeatedFailure: true,
-                    notifyUnstable: true,
-                    url: "${env.MSTEAMS_URL}"
-            ]]
-    )
-  }
-
-  stages {  
-    stage("Checkout") {
-      steps {
-        echo "Branch: ${env.BRANCH_NAME}"
-        checkout scm
-      }
-    }
-    
-    stage("Build for Python 3") {
-      steps {
-        echo "Build Number: ${env.BUILD_NUMBER}"
-        script {
-            env.GIT_COMMIT = sh(returnStdout: true, script: 'git rev-parse HEAD').trim()
-            env.GIT_BRANCH = sh(returnStdout: true, script: 'git rev-parse --abbrev-ref HEAD').trim()
-            echo "git commit: ${env.GIT_COMMIT}"
-            echo "git branch: ${env.BRANCH_NAME} ${env.GIT_BRANCH}"
-            // env.BRANCH_NAME is only supplied to multi-branch pipeline jobs
-            if (env.BRANCH_NAME == null) {
-                env.BRANCH_NAME = "master"
-            }
-
-            if (env.BRANCH_NAME != null && env.BRANCH_NAME.startsWith("Release")) {
-                env.IS_RELEASE = "YES"
-                env.RELEASE_VERSION = "${env.BRANCH_NAME}".replace('Release_', '')
-                echo "release version: ${env.RELEASE_VERSION}"
-            }
-            else {
-                env.IS_RELEASE = "NO"
-                env.RELEASE_VERSION = ""
-            }
-        }
-        
-        sh """
-            git clean -fqdx
-            export BUILD_NUMBER=${env.BUILD_NUMBER}
-            export BRANCH_NAME=${env.BRANCH_NAME}
-            export GIT_COMMIT=${env.GIT_COMMIT}
-            export RELEASE_BRANCH=${env.RELEASE_VERSION}
-            export RELEASE=${env.IS_RELEASE}
-            cd package_builder
-            sh jenkins_build_python.sh
-            """
-      }
-    }
-    stage("Report Unit Tests python 3") {
-      steps {
-        junit '**/test-reports/TEST-*.xml'
-      }
-   }
-    stage("Trigger Downstream") {
-      steps {
-        build job: 'ibex_gui_linux_pipeline', wait: false
-      }
-    }
-  }
-  post {
-    always {
-       archiveArtifacts artifacts: 'docs/_build/html/**/*', caseSensitive: false
-    }
-  }
-}
diff --git a/README.md b/README.md
index 949ef816..793edf48 100644
--- a/README.md
+++ b/README.md
@@ -1,21 +1,11 @@
 # genie_python
 
-The ISIS Python-based instrument control and scripting library.
+Instrument control and scripting library at the ISIS Neutron & Muon source.
 
-## Instrument initialisation
+---
 
-By default when setting an instrument the init_default.py file is loaded. 
-This file checks for the existence of a folder called C:\Instrument\Settings\config\NDX%INSTNAME%\Python and adds this to the sys path if it does.
-If this path exists and contains a file called init_%INSTNAME%.py, it will load it too.
+Documentation: https://isiscomputinggroup.github.io/genie/genie_python
 
-On the NDX any files in C:\Instrument\Settings\config\NDX%INSTNAME%\Python can be added to SVN for safe keeping.
+Source: https://github.com/ISISComputingGroup/genie
 
-Python modules can be imported directly from the C:\Instrument\Settings\config\NDX%INSTNAME%\Python directory. If running on a client it is necessary to have a copy of the Python directory for the instrument being connected to in the correct location.
-
-Folders inside the Python directory must have a `__init__.py` file for them to be available to be imported.
-
-## Start-up
-The line "from genie_python import *" in genie_startup is responsible for loading all the genie_python stuff!
-This file also contains code for disabling quickedit and for making genie_python guess the instrument name.
-
-As genie_python is running inside IPython we use c.TerminalIPythonApp.exec_files to run genie_start.py, so everything is imported correctly.
+PyPi: https://pypi.org/project/genie_python/
diff --git a/doc/Makefile b/doc/Makefile
deleted file mode 100644
index 9bf33cfb..00000000
--- a/doc/Makefile
+++ /dev/null
@@ -1,177 +0,0 @@
-# Makefile for Sphinx documentation
-#
-
-# You can set these variables from the command line.
-SPHINXOPTS    =
-SPHINXBUILD   = sphinx-build
-PAPER         =
-BUILDDIR      = _build
-
-# User-friendly check for sphinx-build
-ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1)
-$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/)
-endif
-
-# Internal variables.
-PAPEROPT_a4     = -D latex_paper_size=a4
-PAPEROPT_letter = -D latex_paper_size=letter
-ALLSPHINXOPTS   = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
-# the i18n builder cannot share the environment and doctrees with the others
-I18NSPHINXOPTS  = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
-
-.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext
-
-help:
-	@echo "Please use \`make <target>' where <target> is one of"
-	@echo "  html       to make standalone HTML files"
-	@echo "  dirhtml    to make HTML files named index.html in directories"
-	@echo "  singlehtml to make a single large HTML file"
-	@echo "  pickle     to make pickle files"
-	@echo "  json       to make JSON files"
-	@echo "  htmlhelp   to make HTML files and a HTML help project"
-	@echo "  qthelp     to make HTML files and a qthelp project"
-	@echo "  devhelp    to make HTML files and a Devhelp project"
-	@echo "  epub       to make an epub"
-	@echo "  latex      to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
-	@echo "  latexpdf   to make LaTeX files and run them through pdflatex"
-	@echo "  latexpdfja to make LaTeX files and run them through platex/dvipdfmx"
-	@echo "  text       to make text files"
-	@echo "  man        to make manual pages"
-	@echo "  texinfo    to make Texinfo files"
-	@echo "  info       to make Texinfo files and run them through makeinfo"
-	@echo "  gettext    to make PO message catalogs"
-	@echo "  changes    to make an overview of all changed/added/deprecated items"
-	@echo "  xml        to make Docutils-native XML files"
-	@echo "  pseudoxml  to make pseudoxml-XML files for display purposes"
-	@echo "  linkcheck  to check all external links for integrity"
-	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"
-
-clean:
-	rm -rf $(BUILDDIR)/*
-
-html:
-	$(SPHINXBUILD) -W -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
-	@echo
-	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
-
-dirhtml:
-	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
-	@echo
-	@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
-
-singlehtml:
-	$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
-	@echo
-	@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."
-
-pickle:
-	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
-	@echo
-	@echo "Build finished; now you can process the pickle files."
-
-json:
-	$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
-	@echo
-	@echo "Build finished; now you can process the JSON files."
-
-htmlhelp:
-	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
-	@echo
-	@echo "Build finished; now you can run HTML Help Workshop with the" \
-	      ".hhp project file in $(BUILDDIR)/htmlhelp."
-
-qthelp:
-	$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
-	@echo
-	@echo "Build finished; now you can run "qcollectiongenerator" with the" \
-	      ".qhcp project file in $(BUILDDIR)/qthelp, like this:"
-	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/genie_python.qhcp"
-	@echo "To view the help file:"
-	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/genie_python.qhc"
-
-devhelp:
-	$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
-	@echo
-	@echo "Build finished."
-	@echo "To view the help file:"
-	@echo "# mkdir -p $$HOME/.local/share/devhelp/genie_python"
-	@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/genie_python"
-	@echo "# devhelp"
-
-epub:
-	$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
-	@echo
-	@echo "Build finished. The epub file is in $(BUILDDIR)/epub."
-
-latex:
-	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
-	@echo
-	@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
-	@echo "Run \`make' in that directory to run these through (pdf)latex" \
-	      "(use \`make latexpdf' here to do that automatically)."
-
-latexpdf:
-	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
-	@echo "Running LaTeX files through pdflatex..."
-	$(MAKE) -C $(BUILDDIR)/latex all-pdf
-	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
-
-latexpdfja:
-	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
-	@echo "Running LaTeX files through platex and dvipdfmx..."
-	$(MAKE) -C $(BUILDDIR)/latex all-pdf-ja
-	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
-
-text:
-	$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
-	@echo
-	@echo "Build finished. The text files are in $(BUILDDIR)/text."
-
-man:
-	$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
-	@echo
-	@echo "Build finished. The manual pages are in $(BUILDDIR)/man."
-
-texinfo:
-	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
-	@echo
-	@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
-	@echo "Run \`make' in that directory to run these through makeinfo" \
-	      "(use \`make info' here to do that automatically)."
-
-info:
-	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
-	@echo "Running Texinfo files through makeinfo..."
-	make -C $(BUILDDIR)/texinfo info
-	@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."
-
-gettext:
-	$(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale
-	@echo
-	@echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."
-
-changes:
-	$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
-	@echo
-	@echo "The overview file is in $(BUILDDIR)/changes."
-
-linkcheck:
-	$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
-	@echo
-	@echo "Link check complete; look for any errors in the above output " \
-	      "or in $(BUILDDIR)/linkcheck/output.txt."
-
-doctest:
-	$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
-	@echo "Testing of doctests in the sources finished, look at the " \
-	      "results in $(BUILDDIR)/doctest/output.txt."
-
-xml:
-	$(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml
-	@echo
-	@echo "Build finished. The XML files are in $(BUILDDIR)/xml."
-
-pseudoxml:
-	$(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml
-	@echo
-	@echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml."
diff --git a/doc/make.bat b/doc/make.bat
deleted file mode 100644
index 2c0993f5..00000000
--- a/doc/make.bat
+++ /dev/null
@@ -1,242 +0,0 @@
-@ECHO OFF
-
-REM Command file for Sphinx documentation
-
-if "%SPHINXBUILD%" == "" (
-	set SPHINXBUILD=sphinx-build
-)
-set BUILDDIR=_build
-set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% .
-set I18NSPHINXOPTS=%SPHINXOPTS% .
-if NOT "%PAPER%" == "" (
-	set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS%
-	set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS%
-)
-
-if "%1" == "" goto help
-
-if "%1" == "help" (
-	:help
-	echo.Please use `make ^<target^>` where ^<target^> is one of
-	echo.  html       to make standalone HTML files
-	echo.  dirhtml    to make HTML files named index.html in directories
-	echo.  singlehtml to make a single large HTML file
-	echo.  pickle     to make pickle files
-	echo.  json       to make JSON files
-	echo.  htmlhelp   to make HTML files and a HTML help project
-	echo.  qthelp     to make HTML files and a qthelp project
-	echo.  devhelp    to make HTML files and a Devhelp project
-	echo.  epub       to make an epub
-	echo.  latex      to make LaTeX files, you can set PAPER=a4 or PAPER=letter
-	echo.  text       to make text files
-	echo.  man        to make manual pages
-	echo.  texinfo    to make Texinfo files
-	echo.  gettext    to make PO message catalogs
-	echo.  changes    to make an overview over all changed/added/deprecated items
-	echo.  xml        to make Docutils-native XML files
-	echo.  pseudoxml  to make pseudoxml-XML files for display purposes
-	echo.  linkcheck  to check all external links for integrity
-	echo.  doctest    to run all doctests embedded in the documentation if enabled
-	goto end
-)
-
-if "%1" == "clean" (
-	for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i
-	del /q /s %BUILDDIR%\*
-	goto end
-)
-
-
-%SPHINXBUILD% 2> nul
-if errorlevel 9009 (
-	echo.
-	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
-	echo.installed, then set the SPHINXBUILD environment variable to point
-	echo.to the full path of the 'sphinx-build' executable. Alternatively you
-	echo.may add the Sphinx directory to PATH.
-	echo.
-	echo.If you don't have Sphinx installed, grab it from
-	echo.http://sphinx-doc.org/
-	exit /b 1
-)
-
-if "%1" == "html" (
-	%SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished. The HTML pages are in %BUILDDIR%/html.
-	goto end
-)
-
-if "%1" == "dirhtml" (
-	%SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml.
-	goto end
-)
-
-if "%1" == "singlehtml" (
-	%SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml.
-	goto end
-)
-
-if "%1" == "pickle" (
-	%SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished; now you can process the pickle files.
-	goto end
-)
-
-if "%1" == "json" (
-	%SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished; now you can process the JSON files.
-	goto end
-)
-
-if "%1" == "htmlhelp" (
-	%SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished; now you can run HTML Help Workshop with the ^
-.hhp project file in %BUILDDIR%/htmlhelp.
-	goto end
-)
-
-if "%1" == "qthelp" (
-	%SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished; now you can run "qcollectiongenerator" with the ^
-.qhcp project file in %BUILDDIR%/qthelp, like this:
-	echo.^> qcollectiongenerator %BUILDDIR%\qthelp\genie_python.qhcp
-	echo.To view the help file:
-	echo.^> assistant -collectionFile %BUILDDIR%\qthelp\genie_python.ghc
-	goto end
-)
-
-if "%1" == "devhelp" (
-	%SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished.
-	goto end
-)
-
-if "%1" == "epub" (
-	%SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished. The epub file is in %BUILDDIR%/epub.
-	goto end
-)
-
-if "%1" == "latex" (
-	%SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished; the LaTeX files are in %BUILDDIR%/latex.
-	goto end
-)
-
-if "%1" == "latexpdf" (
-	%SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex
-	cd %BUILDDIR%/latex
-	make all-pdf
-	cd %BUILDDIR%/..
-	echo.
-	echo.Build finished; the PDF files are in %BUILDDIR%/latex.
-	goto end
-)
-
-if "%1" == "latexpdfja" (
-	%SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex
-	cd %BUILDDIR%/latex
-	make all-pdf-ja
-	cd %BUILDDIR%/..
-	echo.
-	echo.Build finished; the PDF files are in %BUILDDIR%/latex.
-	goto end
-)
-
-if "%1" == "text" (
-	%SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished. The text files are in %BUILDDIR%/text.
-	goto end
-)
-
-if "%1" == "man" (
-	%SPHINXBUILD% -b man %ALLSPHINXOPTS% %BUILDDIR%/man
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished. The manual pages are in %BUILDDIR%/man.
-	goto end
-)
-
-if "%1" == "texinfo" (
-	%SPHINXBUILD% -b texinfo %ALLSPHINXOPTS% %BUILDDIR%/texinfo
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished. The Texinfo files are in %BUILDDIR%/texinfo.
-	goto end
-)
-
-if "%1" == "gettext" (
-	%SPHINXBUILD% -b gettext %I18NSPHINXOPTS% %BUILDDIR%/locale
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished. The message catalogs are in %BUILDDIR%/locale.
-	goto end
-)
-
-if "%1" == "changes" (
-	%SPHINXBUILD% -b changes %ALLSPHINXOPTS% %BUILDDIR%/changes
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.The overview file is in %BUILDDIR%/changes.
-	goto end
-)
-
-if "%1" == "linkcheck" (
-	%SPHINXBUILD% -b linkcheck %ALLSPHINXOPTS% %BUILDDIR%/linkcheck
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Link check complete; look for any errors in the above output ^
-or in %BUILDDIR%/linkcheck/output.txt.
-	goto end
-)
-
-if "%1" == "doctest" (
-	%SPHINXBUILD% -b doctest %ALLSPHINXOPTS% %BUILDDIR%/doctest
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Testing of doctests in the sources finished, look at the ^
-results in %BUILDDIR%/doctest/output.txt.
-	goto end
-)
-
-if "%1" == "xml" (
-	%SPHINXBUILD% -b xml %ALLSPHINXOPTS% %BUILDDIR%/xml
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished. The XML files are in %BUILDDIR%/xml.
-	goto end
-)
-
-if "%1" == "pseudoxml" (
-	%SPHINXBUILD% -b pseudoxml %ALLSPHINXOPTS% %BUILDDIR%/pseudoxml
-	if errorlevel 1 exit /b 1
-	echo.
-	echo.Build finished. The pseudo-XML files are in %BUILDDIR%/pseudoxml.
-	goto end
-)
-
-:end
diff --git a/doc/make_doc.sh b/doc/make_doc.sh
deleted file mode 100644
index c117445b..00000000
--- a/doc/make_doc.sh
+++ /dev/null
@@ -1,8 +0,0 @@
-#!/bin/sh
-set -o errexit
-
-source ../package_builder/build-genie-python/venv/bin/activate
-python3 -m pip install -r requirements.txt
-make html
-
-deactivate
diff --git a/mantid_requirements.txt b/mantid_requirements.txt
deleted file mode 100644
index c93c5de9..00000000
--- a/mantid_requirements.txt
+++ /dev/null
@@ -1,12 +0,0 @@
-#
-# additional requirements needed to run genie python in a mantid python session
-#
-pylint==2.13.9
-mysql-connector-python
-CaChannel
-graypy
-mock
-# these are also needed by genie python but look to be already in Mantid
-#pywin32;platform_system=="Windows"
-#future
-#psutil
diff --git a/parse_rules b/parse_rules
deleted file mode 100644
index 290f3f42..00000000
--- a/parse_rules
+++ /dev/null
@@ -1,8 +0,0 @@
-# allow for [timestamp]
-ok /IPython does not exist, auto complete not installed/
-error /(?i)^(\[[^]]*\] )?error:/
-error /(?i)^(\[[^]]*\] )?fatal:/
-error /FAILED \(errors=/
-error /FAILED \(failures=/
-warning /(?i)^(\[[^]]*\] )?warning:?/
-info /(?i)^(\[[^]]*\] )?info:?/
diff --git a/pyproject.toml b/pyproject.toml
index 86e08b26..c055d372 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -28,9 +28,6 @@ classifiers = [
 dependencies = [
   # EPICS Channel access lib
   "CaChannel",
-  # Caffi provides some EPICS CA definitions if CaChannel is falling back to using caffi backend
-  # (not used if CaChannel._ca is available)
-  "caffi",
   # Send log messages to graylog
   "graypy",
   # genie_python will install ipython completers
diff --git a/src/genie_python/genie_cachannel_wrapper.py b/src/genie_python/genie_cachannel_wrapper.py
index a703d990..c5ad58cb 100644
--- a/src/genie_python/genie_cachannel_wrapper.py
+++ b/src/genie_python/genie_cachannel_wrapper.py
@@ -21,7 +21,13 @@
         dbf_type_to_DBR_TIME,
     )
 except ImportError:
-    from caffi.ca import AlarmCondition, AlarmSeverity, dbf_type_to_DBR_STS, dbf_type_to_DBR_TIME
+    # Note: caffi dynamically added to dependencies by CaChannel if not using built backend.
+    from caffi.ca import (  # type: ignore[reportMissingImports]
+        AlarmCondition,
+        AlarmSeverity,
+        dbf_type_to_DBR_STS,
+        dbf_type_to_DBR_TIME,
+    )
 
 if TYPE_CHECKING:
     from genie_python.genie import PVValue
diff --git a/src/genie_python/genie_dae.py b/src/genie_python/genie_dae.py
index d9e69251..474b79c5 100644
--- a/src/genie_python/genie_dae.py
+++ b/src/genie_python/genie_dae.py
@@ -22,7 +22,8 @@
 try:
     from CaChannel._ca import AlarmCondition, AlarmSeverity
 except ImportError:
-    from caffi.ca import AlarmCondition, AlarmSeverity
+    # Note: caffi dynamically added to dependencies by CaChannel if not using built backend.
+    from caffi.ca import AlarmCondition, AlarmSeverity  # type: ignore[reportMissingImports]
 
 from genie_python.genie_cachannel_wrapper import CaChannelWrapper
 from genie_python.genie_change_cache import ChangeCache
diff --git a/src/genie_python/run_tests.py b/src/genie_python/run_tests.py
deleted file mode 100644
index 496cf82a..00000000
--- a/src/genie_python/run_tests.py
+++ /dev/null
@@ -1,56 +0,0 @@
-# This file is part of the ISIS IBEX application.
-# Copyright (C) 2012-2016 Science & Technology Facilities Council.
-# All rights reserved.
-#
-# This program is distributed in the hope that it will be useful.
-# This program and the accompanying materials are made available under the
-# terms of the Eclipse Public License v1.0 which accompanies this distribution.
-# EXCEPT AS EXPRESSLY SET FORTH IN THE ECLIPSE PUBLIC LICENSE V1.0, THE PROGRAM
-# AND ACCOMPANYING MATERIALS ARE PROVIDED ON AN "AS IS" BASIS, WITHOUT WARRANTIES
-# OR CONDITIONS OF ANY KIND.  See the Eclipse Public License v1.0 for more details.
-#
-# You should have received a copy of the Eclipse Public License v1.0
-# along with this program; if not, you can obtain a copy from
-# https://www.eclipse.org/org/documents/epl-v10.php or
-# http://opensource.org/licenses/eclipse-1.0.php
-
-# Add root path for access to server_commons
-from __future__ import absolute_import, print_function
-
-import argparse
-import os
-import sys
-
-# Standard imports
-import unittest
-
-import xmlrunner
-
-DEFAULT_DIRECTORY = os.path.join(".", "test-reports")
-
-
-if __name__ == "__main__":
-    # get output directory from command line arguments
-    parser = argparse.ArgumentParser()
-    parser.add_argument(
-        "-o",
-        "--output_dir",
-        nargs=1,
-        type=str,
-        default=[DEFAULT_DIRECTORY],
-        help="The directory to save the test reports",
-    )
-    args = parser.parse_args()
-    xml_dir = args.output_dir[0]
-
-    # Load tests from test suites
-    test_dir = os.path.abspath(os.path.join(os.path.dirname(__file__), "test_modules"))
-    pattern = "*test_*.py"
-    test_suite = unittest.TestLoader().discover(test_dir, pattern=pattern)
-
-    print("\n\n------ BEGINNING GENIE_PYTHON UNIT TESTS ------")
-    ret_vals = xmlrunner.XMLTestRunner(output=xml_dir).run(test_suite)
-    print("------ GENIE_PYTHON UNIT TESTS COMPLETE ------\n\n")
-
-    # Return failure exit code if a test failed
-    sys.exit(bool(ret_vals.errors or ret_vals.failures))