Fixes download of hdf5 files (#24)

* Save binary responses to file

* Upgrade vulnerabilities GHSA-5phf-pp7p-vc2r

* Skips decoding

Author: pcrespov

osparc/api_client.py

@@ -556,8 +556,12 @@ def __deserialize_file(self, response):
                                  content_disposition).group(1)
             path = os.path.join(os.path.dirname(path), filename)
 
-        with open(path, "w") as f:
-            f.write(response.data)
+        try:
+            with open(path, "w") as f:
+                f.write(response.data)
+        except TypeError:
+            with open(path, "wb") as f:
+                f.write(response.data)
 
         return path
 

osparc/rest.py

@@ -220,10 +220,11 @@ def request(self, method, url, query_params=None, headers=None,
             # In the python 3, the response.data is bytes.
             # we need to decode it to string.
             if six.PY3:
-                r.data = r.data.decode('utf8')
-
-            # log response body
-            logger.debug("response body: %s", r.data)
+                try:
+                    r.data = r.data.decode('utf8')
+                except UnicodeDecodeError:
+                    # NOTE: hdf5 files cannot be decoded
+                    pass
 
         if not 200 <= r.status <= 299:
             raise ApiException(http_resp=r)

setup.py

@@ -7,7 +7,7 @@
 NAME = "osparc"
 VERSION = "0.4.3"
 API_VERSION = "0.4"
-REQUIRES = ["urllib3 >= 1.15", "six >= 1.10", "certifi", "python-dateutil"]
+REQUIRES = ["urllib3 >= 1.26.4", "six >= 1.10", "certifi", "python-dateutil"]
 README = Path("README.md").read_text()
 
 setup(