Merge branch 'main' into blockedunitrange_nondual

Author: ogauthe

NDTensors/Project.toml

@@ -1,7 +1,7 @@
 name = "NDTensors"
 uuid = "23ae76d9-e61a-49c4-8f12-3f1a16adf9cf"
 authors = ["Matthew Fishman <[email protected]>"]
-version = "0.3.63"
+version = "0.3.64"
 
 [deps]
 Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"

NDTensors/src/lib/BlockSparseArrays/src/BlockSparseArrays.jl

@@ -7,6 +7,7 @@ include("blocksparsearrayinterface/broadcast.jl")
 include("blocksparsearrayinterface/map.jl")
 include("blocksparsearrayinterface/arraylayouts.jl")
 include("blocksparsearrayinterface/views.jl")
+include("blocksparsearrayinterface/cat.jl")
 include("abstractblocksparsearray/abstractblocksparsearray.jl")
 include("abstractblocksparsearray/wrappedabstractblocksparsearray.jl")
 include("abstractblocksparsearray/abstractblocksparsematrix.jl")
@@ -17,6 +18,7 @@ include("abstractblocksparsearray/sparsearrayinterface.jl")
 include("abstractblocksparsearray/broadcast.jl")
 include("abstractblocksparsearray/map.jl")
 include("abstractblocksparsearray/linearalgebra.jl")
+include("abstractblocksparsearray/cat.jl")
 include("blocksparsearray/defaults.jl")
 include("blocksparsearray/blocksparsearray.jl")
 include("BlockArraysSparseArrayInterfaceExt/BlockArraysSparseArrayInterfaceExt.jl")

NDTensors/src/lib/BlockSparseArrays/src/abstractblocksparsearray/cat.jl

@@ -0,0 +1,7 @@
+# TODO: Change to `AnyAbstractBlockSparseArray`.
+function Base.cat(as::BlockSparseArrayLike...; dims)
+  # TODO: Use `sparse_cat` instead, currently
+  # that erroneously allocates too many blocks that are
+  # zero and shouldn't be stored.
+  return blocksparse_cat(as...; dims)
+end

NDTensors/src/lib/BlockSparseArrays/src/blocksparsearrayinterface/cat.jl

@@ -0,0 +1,26 @@
+using BlockArrays: AbstractBlockedUnitRange, blockedrange, blocklengths
+using NDTensors.SparseArrayInterface: SparseArrayInterface, allocate_cat_output, sparse_cat!
+
+# TODO: Maybe move to `SparseArrayInterfaceBlockArraysExt`.
+# TODO: Handle dual graded unit ranges, for example in a new `SparseArrayInterfaceGradedAxesExt`.
+function SparseArrayInterface.axis_cat(
+  a1::AbstractBlockedUnitRange, a2::AbstractBlockedUnitRange
+)
+  return blockedrange(vcat(blocklengths(a1), blocklengths(a2)))
+end
+
+# that erroneously allocates too many blocks that are
+# zero and shouldn't be stored.
+function blocksparse_cat!(a_dest::AbstractArray, as::AbstractArray...; dims)
+  sparse_cat!(blocks(a_dest), blocks.(as)...; dims)
+  return a_dest
+end
+
+# TODO: Delete this in favor of `sparse_cat`, currently
+# that erroneously allocates too many blocks that are
+# zero and shouldn't be stored.
+function blocksparse_cat(as::AbstractArray...; dims)
+  a_dest = allocate_cat_output(as...; dims)
+  blocksparse_cat!(a_dest, as...; dims)
+  return a_dest
+end

NDTensors/src/lib/BlockSparseArrays/test/test_basics.jl

@@ -866,6 +866,33 @@ using .NDTensorsTestUtils: devices_list, is_supported_eltype
     @test a1' * a2 ≈ Array(a1)' * Array(a2)
     @test dot(a1, a2) ≈ a1' * a2
   end
+  @testset "cat" begin
+    a1 = dev(BlockSparseArray{elt}([2, 3], [2, 3]))
+    a1[Block(2, 1)] = dev(randn(elt, size(@view(a1[Block(2, 1)]))))
+    a2 = dev(BlockSparseArray{elt}([2, 3], [2, 3]))
+    a2[Block(1, 2)] = dev(randn(elt, size(@view(a2[Block(1, 2)]))))
+
+    a_dest = cat(a1, a2; dims=1)
+    @test block_nstored(a_dest) == 2
+    @test blocklengths.(axes(a_dest)) == ([2, 3, 2, 3], [2, 3])
+    @test issetequal(block_stored_indices(a_dest), [Block(2, 1), Block(3, 2)])
+    @test a_dest[Block(2, 1)] == a1[Block(2, 1)]
+    @test a_dest[Block(3, 2)] == a2[Block(1, 2)]
+
+    a_dest = cat(a1, a2; dims=2)
+    @test block_nstored(a_dest) == 2
+    @test blocklengths.(axes(a_dest)) == ([2, 3], [2, 3, 2, 3])
+    @test issetequal(block_stored_indices(a_dest), [Block(2, 1), Block(1, 4)])
+    @test a_dest[Block(2, 1)] == a1[Block(2, 1)]
+    @test a_dest[Block(1, 4)] == a2[Block(1, 2)]
+
+    a_dest = cat(a1, a2; dims=(1, 2))
+    @test block_nstored(a_dest) == 2
+    @test blocklengths.(axes(a_dest)) == ([2, 3, 2, 3], [2, 3, 2, 3])
+    @test issetequal(block_stored_indices(a_dest), [Block(2, 1), Block(3, 4)])
+    @test a_dest[Block(2, 1)] == a1[Block(2, 1)]
+    @test a_dest[Block(3, 4)] == a2[Block(1, 2)]
+  end
   @testset "TensorAlgebra" begin
     a1 = dev(BlockSparseArray{elt}([2, 3], [2, 3]))
     a1[Block(1, 1)] = dev(randn(elt, size(@view(a1[Block(1, 1)]))))

NDTensors/src/lib/SparseArrayInterface/src/SparseArrayInterface.jl

@@ -12,6 +12,7 @@ include("sparsearrayinterface/broadcast.jl")
 include("sparsearrayinterface/conversion.jl")
 include("sparsearrayinterface/wrappers.jl")
 include("sparsearrayinterface/zero.jl")
+include("sparsearrayinterface/cat.jl")
 include("sparsearrayinterface/SparseArrayInterfaceLinearAlgebraExt.jl")
 include("abstractsparsearray/abstractsparsearray.jl")
 include("abstractsparsearray/abstractsparsematrix.jl")
@@ -24,6 +25,7 @@ include("abstractsparsearray/broadcast.jl")
 include("abstractsparsearray/map.jl")
 include("abstractsparsearray/baseinterface.jl")
 include("abstractsparsearray/convert.jl")
+include("abstractsparsearray/cat.jl")
 include("abstractsparsearray/SparseArrayInterfaceSparseArraysExt.jl")
 include("abstractsparsearray/SparseArrayInterfaceLinearAlgebraExt.jl")
 end

NDTensors/src/lib/SparseArrayInterface/src/abstractsparsearray/cat.jl

@@ -0,0 +1,4 @@
+# TODO: Change to `AnyAbstractSparseArray`.
+function Base.cat(as::SparseArrayLike...; dims)
+  return sparse_cat(as...; dims)
+end

NDTensors/src/lib/SparseArrayInterface/src/sparsearrayinterface/cat.jl

@@ -0,0 +1,64 @@
+unval(x) = x
+unval(::Val{x}) where {x} = x
+
+# TODO: Assert that `a1` and `a2` start at one.
+axis_cat(a1::AbstractUnitRange, a2::AbstractUnitRange) = Base.OneTo(length(a1) + length(a2))
+function axis_cat(
+  a1::AbstractUnitRange, a2::AbstractUnitRange, a_rest::AbstractUnitRange...
+)
+  return axis_cat(axis_cat(a1, a2), a_rest...)
+end
+function cat_axes(as::AbstractArray...; dims)
+  return ntuple(length(first(axes.(as)))) do dim
+    return if dim in unval(dims)
+      axis_cat(map(axes -> axes[dim], axes.(as))...)
+    else
+      axes(first(as))[dim]
+    end
+  end
+end
+
+function allocate_cat_output(as::AbstractArray...; dims)
+  eltype_dest = promote_type(eltype.(as)...)
+  axes_dest = cat_axes(as...; dims)
+  # TODO: Promote the block types of the inputs rather than using
+  # just the first input.
+  # TODO: Make this customizable with `cat_similar`.
+  # TODO: Base the zero element constructor on those of the inputs,
+  # for example block sparse arrays.
+  return similar(first(as), eltype_dest, axes_dest...)
+end
+
+# https://github.com/JuliaLang/julia/blob/v1.11.1/base/abstractarray.jl#L1748-L1857
+# https://docs.julialang.org/en/v1/base/arrays/#Concatenation-and-permutation
+# This is very similar to the `Base.cat` implementation but handles zero values better.
+function cat_offset!(
+  a_dest::AbstractArray, offsets, a1::AbstractArray, a_rest::AbstractArray...; dims
+)
+  inds = ntuple(ndims(a_dest)) do dim
+    dim in unval(dims) ? offsets[dim] .+ axes(a1, dim) : axes(a_dest, dim)
+  end
+  a_dest[inds...] = a1
+  new_offsets = ntuple(ndims(a_dest)) do dim
+    dim in unval(dims) ? offsets[dim] + size(a1, dim) : offsets[dim]
+  end
+  cat_offset!(a_dest, new_offsets, a_rest...; dims)
+  return a_dest
+end
+function cat_offset!(a_dest::AbstractArray, offsets; dims)
+  return a_dest
+end
+
+# TODO: Define a generic `cat!` function.
+function sparse_cat!(a_dest::AbstractArray, as::AbstractArray...; dims)
+  offsets = ntuple(zero, ndims(a_dest))
+  # TODO: Fill `a_dest` with zeros if needed.
+  cat_offset!(a_dest, offsets, as...; dims)
+  return a_dest
+end
+
+function sparse_cat(as::AbstractArray...; dims)
+  a_dest = allocate_cat_output(as...; dims)
+  sparse_cat!(a_dest, as...; dims)
+  return a_dest
+end

NDTensors/src/lib/SparseArrayInterface/src/sparsearrayinterface/indexing.jl

@@ -137,12 +137,31 @@ function sparse_setindex!(a::AbstractArray, value, I::Vararg{Int})
   return a
 end
 
+# Fix ambiguity error
+function sparse_setindex!(a::AbstractArray, value)
+  sparse_setindex!(a, value, CartesianIndex())
+  return a
+end
+
 # Linear indexing
 function sparse_setindex!(a::AbstractArray, value, I::CartesianIndex{1})
   sparse_setindex!(a, value, CartesianIndices(a)[I])
   return a
 end
 
+# Slicing
+# TODO: Make this handle more general slicing operations,
+# base it off of `ArrayLayouts.sub_materialize`.
+function sparse_setindex!(a::AbstractArray, value, I::AbstractUnitRange...)
+  inds = CartesianIndices(I)
+  for i in stored_indices(value)
+    if i in CartesianIndices(inds)
+      a[inds[i]] = value[i]
+    end
+  end
+  return a
+end
+
 # Handle trailing indices
 function sparse_setindex!(a::AbstractArray, value, I::CartesianIndex)
   t = Tuple(I)

NDTensors/src/lib/SparseArrayInterface/test/test_abstractsparsearray.jl

@@ -342,6 +342,38 @@ using Test: @test, @testset
   @test a_dest isa SparseArray{elt}
   @test SparseArrayInterface.nstored(a_dest) == 2
 
+  # cat
+  a1 = SparseArray{elt}(2, 3)
+  a1[1, 2] = 12
+  a1[2, 1] = 21
+  a2 = SparseArray{elt}(2, 3)
+  a2[1, 1] = 11
+  a2[2, 2] = 22
+
+  a_dest = cat(a1, a2; dims=1)
+  @test size(a_dest) == (4, 3)
+  @test SparseArrayInterface.nstored(a_dest) == 4
+  @test a_dest[1, 2] == a1[1, 2]
+  @test a_dest[2, 1] == a1[2, 1]
+  @test a_dest[3, 1] == a2[1, 1]
+  @test a_dest[4, 2] == a2[2, 2]
+
+  a_dest = cat(a1, a2; dims=2)
+  @test size(a_dest) == (2, 6)
+  @test SparseArrayInterface.nstored(a_dest) == 4
+  @test a_dest[1, 2] == a1[1, 2]
+  @test a_dest[2, 1] == a1[2, 1]
+  @test a_dest[1, 4] == a2[1, 1]
+  @test a_dest[2, 5] == a2[2, 2]
+
+  a_dest = cat(a1, a2; dims=(1, 2))
+  @test size(a_dest) == (4, 6)
+  @test SparseArrayInterface.nstored(a_dest) == 4
+  @test a_dest[1, 2] == a1[1, 2]
+  @test a_dest[2, 1] == a1[2, 1]
+  @test a_dest[3, 4] == a2[1, 1]
+  @test a_dest[4, 5] == a2[2, 2]
+
   ## # Sparse matrix of matrix multiplication
   ## TODO: Make this work, seems to require
   ## a custom zero constructor.