Add support for Python 3.14 (#368)

* Add support for Python 3.14

* Fix missing numpy

Author: ezralanglois

.github/workflows/python.yml

@@ -17,7 +17,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, windows-latest, macOS-latest]
-        pyver: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13']
+        pyver: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13', '3.14']
 
     steps:
       - uses: actions/checkout@v3
@@ -60,6 +60,10 @@ jobs:
         if: ${{ startsWith(matrix.os, 'ubuntu') &&  matrix.pyver == '3.13' }}
         run: docker run --rm -v ${{github.workspace}}/:/io $DOCKER_IMAGE sh /io/tools/package.sh /io /io/dist travis OFF Release cp313-cp313
 
+      - name: Package Python 3.14
+        if: ${{ startsWith(matrix.os, 'ubuntu') &&  matrix.pyver == '3.14' }}
+        run: docker run --rm -v ${{github.workspace}}/:/io $DOCKER_IMAGE sh /io/tools/package.sh /io /io/dist travis OFF Release cp314-cp314
+
       - name: Windows Package Python
         if: ${{ startsWith(matrix.os, 'windows') }}
         shell: cmd

README.md

@@ -10,8 +10,8 @@ Illumina sequencers including **NextSeq 1k/2k** and NovaSeqX. These libraries ar
 with one exception: GA systems have been excluded.
 
 ***
-> We now support an interface to 3.8-3.13
-> Note that 3.10-3.13 are CentOS 7 or later while earlier versions support Centos 5 or later
+> We now support an interface to 3.8-3.14
+> Note that 3.10-3.14 are CentOS 7 or later while earlier versions support Centos 5 or later
 > Note: dumptext has been deprecated in favor of imaging_table and will be removed in the next version
 ***
 
@@ -74,7 +74,7 @@ Install
 
 ### Python
 
-Supported versions for binary distribution: 3.8-3.13.
+Supported versions for binary distribution: 3.8-3.14.
 
 ** Python 2.7, 3.5, 3.6, 3.7 support has been removed **
 

docs/src/changes.md

@@ -1,5 +1,11 @@
 # Changes {#changes}
 
+## v1.8.0
+
+| Date       | Description                 |
+|------------|-----------------------------|
+| 2025-12-09 | Add support for Python 3.14 |
+
 ## v1.7.0
 
 | Date       | Description                                                                  |

docs/src/index.md

@@ -10,7 +10,7 @@ metric files are produced after a run during secondary analysis (index metrics)
 the original data (collapsed quality scores).
 
 ***
->  We now support an interface to Python 3.8 to 3.13 (see contents below)
+>  We now support an interface to Python 3.8 to 3.14 (see contents below)
 ***
 
 Compatibility

docs/src/install.md

@@ -19,7 +19,7 @@ In addition to the binary archive below, there are language specific packages in
 
 Note, we only distribute from GitHub currently, and not PyPi or NuGet.org. These should
 be compatible with most Linux Versions, Mac OSX and Windows. We support
-Python 3.8 to 3.13.
+Python 3.8 to 3.14.
 
 ### Binary Archive (C++, C#, Python, Java)
 
@@ -35,7 +35,7 @@ For Pythons users, a Wheel package is available on Github Releases or PyPI:
 $ pip install interop
 ~~~~~~~~~~~~~
 
-Supported versions for binary distribution: 3.8 to 3.13.
+Supported versions for binary distribution: 3.8 to 3.14.
 
 Test the installation
 

docs/src/python_binding.md

@@ -16,7 +16,7 @@ Older versions (prior to 1.1.3) can be installed using:
     $ pip install -f https://github.com/Illumina/interop/releases/tag/v1.1.2 interop
     $ pip install -f https://github.com/Illumina/interop/releases/latest interop
 
-Note, only Python versions 3.8 to 3.13 are currently 
+Note, only Python versions 3.8 to 3.14 are currently 
 supported as binary builds. Other Python versions must be built 
 from source.
 

tools/package.sh

@@ -173,6 +173,7 @@ if [  -e /opt/python ] ; then
         /opt/python/cp311-cp311/bin/python -m pip install numpy==2.0.0 pandas setuptools
         /opt/python/cp312-cp312/bin/python -m pip install numpy==2.0.0 pandas setuptools
         /opt/python/cp313-cp313/bin/python -m pip install numpy==2.0.0 pandas setuptools
+        /opt/python/cp314-cp314/bin/python -m pip install numpy==2.0.0 pandas setuptools
         /opt/python/cp310-cp310/bin/python -m pip install swig==4.0.2 --prefix=/tmp/usr
 
           echo "Build with specific Python Version: ${PYTHON_VERSION}"