manta/src/c++/lib/svgraph/test/SVLocusSetSerializeTest.cpp at master · Illumina/manta · GitHub

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//
// Manta - Structural Variant and Indel Caller
// Copyright (c) 2013-2025 Illumina, Inc.
//
// This program is licensed under the terms of the Polyform strict license
//
// ***As far as the law allows, the software comes as is, without
// any warranty or condition, and the licensor will not be liable
// to you for any damages arising out of these terms or the use
// or nature of the software, under any kind of legal claim.***
//
// You should have received a copy of the PolyForm Strict License 1.0.0
// along with this program.  If not, see <https://polyformproject.org/licenses/strict/1.0.0>.
//
//

#include "boost/test/unit_test.hpp"

#include "svgraph/SVLocusSet.hpp"
#include "test/testSVLocusSetUtil.hpp"
#include "test/testSVLocusUtil.hpp"

BOOST_AUTO_TEST_SUITE(SVLocusSetSerialize_test_suite)

BOOST_AUTO_TEST_CASE(test_SVLocusSetSerialize)
{
  // construct a simple two-node locus
  SVLocus locus1;
  locusAddPair(locus1, 1, 10, 20, 2, 30, 40);

  SVLocus locus2;
  locusAddPair(locus2, 3, 10, 20, 4, 30, 40);

  SVLocusSet set1;
  set1.merge(locus1);
  set1.merge(locus2);

  const auto set1_copy_ptr(getSerializedSVLocusSetCopy(set1));

  BOOST_REQUIRE_EQUAL(set1.size(), set1_copy_ptr->size());

  typedef SVLocusSet::const_iterator citer;

  citer i(set1.begin());
  citer i_copy(set1_copy_ptr->begin());

  const SVLocus& set1_locus1(*i);
  const SVLocus& set1_copy_locus1(*i_copy);
  BOOST_REQUIRE_EQUAL(set1_locus1.size(), set1_copy_locus1.size());
}

BOOST_AUTO_TEST_CASE(test_SVLocusSetSerialize2)
{
  SVLocusSet set1;
  {
    SVLocus locus1;
    locusAddPair(locus1, 1, 10, 20, 2, 30, 40);

    SVLocus locus2;
    locusAddPair(locus2, 3, 10, 20, 4, 30, 40);

    set1.merge(locus1);
    set1.merge(locus2);
  }

  SVLocusSet set2;
  {
    SVLocus locus1;
    locusAddPair(locus1, 1, 15, 25, 4, 30, 40);

    SVLocus locus2;
    locusAddPair(locus2, 3, 30, 40, 2, 30, 40);

    set2.merge(locus1);
    set2.merge(locus2);
  }

  const auto set1_copy_ptr(getSerializedSVLocusSetCopy(set1));
  const auto set2_copy_ptr(getSerializedSVLocusSetCopy(set2));

  set1.merge(set2);
  set1_copy_ptr->merge(*set2_copy_ptr);

  BOOST_REQUIRE_EQUAL(set1.size(), set1_copy_ptr->size());

  typedef SVLocusSet::const_iterator citer;

  citer i(set1.begin());
  citer i_copy(set1_copy_ptr->begin());

  const SVLocus& set1_locus1(*i);
  const SVLocus& set1_copy_locus1(*i_copy);
  BOOST_REQUIRE_EQUAL(set1_locus1.size(), set1_copy_locus1.size());
}

BOOST_AUTO_TEST_SUITE_END()