create_annotation_files.bash

[Udaykage]

i am facing some issues in creating annotation files in ribotaper. command used and Error messages as follows
command:
create_annotations_files.bash Fg_ncRNA+Fg_CS30005v1_noUnplaced.gtf FgCS3005_Genome/FgCS3005v1.fa false false create_annotation_files/

<gtf_file> /flush1/kag006/Fg_CS3005_DataAnalysis/Fg_ribotaper/Fg_ncRNA+Fg_CS30005v1_noUnplaced.gtf
<genome_fasta_file(indexed)> /flush1/kag006/Fg_CS3005_DataAnalysis/Fg_ribotaper/FgCS3005_Genome/FgCS3005v1.fa
<use_ccdsid?> false
<use_appris?> false
<dest_folder> /flush1/kag006/Fg_CS3005_DataAnalysis/Fg_ribotaper/create_annotation_files

---

creating directory...
Extracting gene names + biotypes from gtf...
creating bed_files...
creating fasta sequences...
Error: The requested file (unique_exons_ccds.bed) could not be opened. Error message: (Success). Exiting!
assembling transcript information...
[1] "--------creating start_stops_FAR.bed from CDS regions"
Creating transcript cds coordinates from gtf...
[1] "--- extracting transcript-level CDS cordinates --- Thu Jul 18 12:16:40 2019"
[1] "--- extracting transcript-level CDS cordinates, Done! --- Thu Jul 18 12:16:59 2019"
Done!