Merge branch 'main' into efficient-loading

Author: barneydobson

.github/workflows/ci.yml

@@ -13,7 +13,7 @@ jobs:
         python-version: [ "3.9", "3.10", "3.11" ]
 
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}

.github/workflows/draft-pdf.yml

@@ -6,15 +6,15 @@ jobs:
     name: Paper Draft
     steps:
       - name: Checkout
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Build draft PDF
         uses: openjournals/openjournals-draft-action@master
         with:
           journal: joss
           # This should be the path to the paper within your repo.
           paper-path: docs/paper/paper.md
       - name: Upload
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: paper
           # This is the output path where Pandoc will write the compiled

.github/workflows/publish.yml

@@ -9,14 +9,14 @@ jobs:
     name: Build source distribution
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: Build sdist
         run: |
           python -m pip install --upgrade build
           python -m build
 
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@v5
         with:
           path: dist/wsimod*
 
@@ -33,7 +33,7 @@ jobs:
 
     steps:
       - name: Download sdist artifact
-        uses: actions/download-artifact@v5
+        uses: actions/download-artifact@v6
         with:
           name: artifact
           path: dist
@@ -49,7 +49,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - uses: actions/setup-python@v6
         with:
@@ -74,7 +74,7 @@ jobs:
       DAFNI_PASSWORD: ${{ secrets.DAFNI_PASSWORD }}
       PARENT_ID: ${{ vars.PARENT_ID }}
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
 
       - name: Create Docker image

.pre-commit-config.yaml

@@ -5,11 +5,11 @@ repos:
       - id: check-merge-conflict
       - id: debug-statements
   - repo: https://github.com/psf/black-pre-commit-mirror
-    rev: "25.9.0"
+    rev: "25.11.0"
     hooks:
       - id: black
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 'v0.14.2'
+    rev: 'v0.14.7'
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
@@ -18,7 +18,7 @@ repos:
   #   hooks:
   #     - id: mypy
   - repo: https://github.com/igorshubovych/markdownlint-cli
-    rev: v0.45.0
+    rev: v0.46.0
     hooks:
       - id: markdownlint-fix
         args: ["--ignore", "docs/component-library.md", "--disable", "MD013", "MD033", "--"]