- Changes for v2 of the utils

Author: Alan Christie

.travis.yml

@@ -34,8 +34,6 @@ branches:
 install:
 - pip install -r requirements.txt
 - pip install -r package-requirements.txt
-- cd ${TRAVIS_BUILD_DIR}/mock-rdkit
-- python setup.py install
 
 # Test/build execution steps...
 # All in the default 'test' stage.

README.md

@@ -26,14 +26,6 @@ Although the project is based on [Gradle], which is Groovy-based,
 you will need to install **Groovy**. We've tested this framework using Groovy
 `v2.4.11`.
 
-The pipelines are based on the [RDKit] Open-Source Cheminformatics Software
-and are best executed from within a suitably configured [Conda] environment.
-You may need to install some additional modules before you can run the tests,
-these dependencies are captured in our own `requiremenmts.txt` file and
-installed as normal:
-
-    $ pip install -r requiremenmts.txt
-
 >   The module utilities should support both Python 2 and 3 but we recommend
     any modules/pipelines you write support both flavours.
 
@@ -285,5 +277,3 @@ and upload them from the `src/python` directory: -
 [PIP]: https://pypi.python.org/pypi
 [Pipelines]: https://github.com/InformaticsMatters/pipelines.git
 [PyPI]: https://pypi.python.org/pypi
-[RDKit]: http://www.rdkit.org
-[Submodule]: https://git-scm.com/docs/gitsubmodules

data/Kinase_inhibs.sdf.gz

@@ -1,4 +1,4 @@
-coverage == 4.4.2
+coverage == 4.5.1
 pyroma == 2.3
-twine == 1.9.1
+twine == 1.11.0
 wheel == 0.30.0

mock-rdkit/README.rst

@@ -1,10 +1,4 @@
 # Additional modules we depend on.
 # Required from within an RDKIT Conda environment
 
-im-pipelines-utils == 1.0.*
-
-matplotlib == 2.1.1
-molvs == 0.0.9
-scikit-learn == 0.19.1
-scipy == 1.0.0
-standardiser == 0.1.9
+# Nothing