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update to readme
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src/nextflow/README.md

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@@ -162,3 +162,8 @@ docker run -it --rm -v $PWD:$PWD:z -w $PWD -v /var/run/docker.sock:/var/run/dock
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```
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See [test-nextflow.sh](../..test-nextflow.sh) for some real examples.
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To debug in squonk move into the execution dir (/squonk/work/docker/<uuid>) and then execute:
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```
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docker run -it --rm -v $PWD:$PWD:z -w $PWD -v /var/run/docker.sock:/var/run/docker.sock informaticsmatters/nextflow-docker:0.30.2 ./execute
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```

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