initial dimporphite impl

Author: tdudgeon

src/python/pipelines/dimorphite/LICENSE.txt

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src/python/pipelines/dimorphite/README.txt

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+This package uses dimorphite-dl from the Durrant lab at University of Pittsburg.
+For details see:
+Ropp PJ, Kaminsky JC, Yablonski S, Durrant JD (2019) Dimorphite-DL: An open-source
+program for enumerating the ionization states of drug-like small molecules.
+J Cheminform 11:14. doi:10.1186/s13321-019-0336-9.
+
+The original Dimorphite-dl code can be found here:
+https://git.durrantlab.pitt.edu/jdurrant/dimorphite_dl
+The two files dimorphite_dl.py and site_substructures.smarts are copied here.