tests for xcos and featurestein

Author: tdudgeon

src/python/pipelines/rdkit/featurestein-generate.test

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+// Automated pipeline test specification.
+
+[
+
+    version = 1,
+
+    // Testing featurestein-generate.py
+    // reading from STDIN and writing to STDOUT
+    test_featurestein_generate = [
+
+        command: '''python -m pipelines.rdkit.featurestein-generate
+                 -i ${PIN}/mpro/hits-17.sdf.gz
+                 -f ${POUT}featurestein.p''',
+
+        stderr: [ 'Wrote merged feature map with 69 features as pickle to' ],
+
+        creates: [ 'featurestein.p' ]
+    ]
+
+]

src/python/pipelines/rdkit/featurestein-score.test

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+// Automated pipeline test specification.
+
+[
+
+    version = 1,
+
+    // Testing featurestein-score.py
+    // reading from STDIN and writing to STDOUT
+    test_featurestein_score = [
+
+        command: '''python -m pipelines.rdkit.featurestein-score
+                 -i ${PIN}/mpro/poses.sdf.gz
+                 -f ${PIN}/mpro/featurestein.p
+                 -o ${POUT}fstein''',
+
+        stderr: [ 'FeatureMap has 69 features' ],
+
+        creates: [ 'fstein.sdf.gz' ]
+    ]
+
+]

src/python/pipelines/rdkit/xcos.test

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+// Automated pipeline test specification.
+
+[
+
+    version = 1,
+
+    // Testing xcos.py
+    // reading from STDIN and writing to STDOUT
+    test_xcos = [
+
+        command: '''python -m pipelines.rdkit.xcos
+                 -i ${PIN}/mpro/poses.sdf.gz
+                 -f ${PIN}/mpro/hits-17.sdf.gz
+                 -o ${POUT}xcos''',
+
+        stderr: [ 'No output format specified - using sdf' ],
+
+        creates: [ 'xcos.sdf.gz' ]
+    ]
+
+]