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Automatisation de la production de wheels (#1)
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‎.github/workflows/build-conda.yml‎

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name: Use Setup-Miniconda From Marketplace
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on: [push]
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jobs:
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miniconda:
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name: Miniconda ${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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os: ["ubuntu-latest", "windows-latest"]
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steps:
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- uses: actions/checkout@v2
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- uses: conda-incubator/setup-miniconda@v2
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with:
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activate-environment: test
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environment-file: requirements.txt
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python-version: 3.8
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auto-activate-base: false
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- shell: bash -l {0}
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run: |
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conda info
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conda list
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- name: Conda build
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run: |
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conda install conda-build
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conda develop .
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# conda build recipe
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# - name: Lint
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# shell: bash -l {0}
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# run: |
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# conda install flake8
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# python -m flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
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# python -m flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
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# - name: Run pytest
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# shell: bash -l {0}
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# run: |
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# conda install pytest
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# pytest
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‎.github/workflows/cibuildwheels.yml‎

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name: Build wheels and archive (Pypy approach)
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on:
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push:
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branches:
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- master
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- v[0-9]+.[0-9]+.x
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- build-anaconda
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tags:
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- v*
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jobs:
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build_linux_37_and_above_wheels:
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name: Build python ${{ matrix.cibw_python }} wheels on ${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: [ubuntu-18.04]
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cibw_python: [ "cp37-*", "cp38-*", "cp39-*" ]
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steps:
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- uses: actions/checkout@v2
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with:
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fetch-depth: 0
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- uses: actions/setup-python@v2
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name: Install Python
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with:
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python-version: '3.7'
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- name: Set up QEMU
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uses: docker/setup-qemu-action@v1
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with:
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platforms: arm64
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- name: Install cibuildwheel
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run: |
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python -m pip install --upgrade pip
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python -m pip install -r requirements.txt
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python -m pip install cibuildwheel
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- name: Build the wheel
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run: |
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python -m cibuildwheel --output-dir dist
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env:
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CIBW_BUILD: ${{ matrix.cibw_python }}
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CIBW_ARCHS_LINUX: auto aarch64
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CIBW_MANYLINUX_X86_64_IMAGE: manylinux1
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CIBW_MANYLINUX_I686_IMAGE: manylinux1
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# CIBW_TEST_REQUIRES: pytest pooch pytest-localserver pytest-faulthandler
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# CIBW_TEST_COMMAND: pytest --pyargs skimage
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- uses: actions/upload-artifact@v2
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with:
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name: wheels
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path: ./dist/*.whl
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build_macos_wheels:
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name: Build wheels on ${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: [macos-latest]
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steps:
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- uses: actions/checkout@v2
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with:
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fetch-depth: 0
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- uses: actions/setup-python@v2
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name: Install Python
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with:
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python-version: '3.7'
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- name: Install cibuildwheel
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run: |
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python -m pip install cibuildwheel
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- name: Build wheels for CPython 3.9 and Mac OS
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run: |
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brew install libomp
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python -m cibuildwheel --output-dir dist
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env:
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CIBW_BUILD: "cp39-*"
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CIBW_MANYLINUX_X86_64_IMAGE: manylinux1
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CIBW_MANYLINUX_I686_IMAGE: manylinux1
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# CIBW_BEFORE_BUILD: pip install certifi numpy==1.19.3
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CC: /usr/bin/clang
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CXX: /usr/bin/clang++
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CPPFLAGS: "-Xpreprocessor -fopenmp"
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CFLAGS: "-Wno-implicit-function-declaration -I/usr/local/opt/libomp/include"
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CXXFLAGS: "-I/usr/local/opt/libomp/include"
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LDFLAGS: "-Wl,-rpath,/usr/local/opt/libomp/lib -L/usr/local/opt/libomp/lib -lomp"
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# CIBW_TEST_REQUIRES: pytest pooch pytest-localserver pytest-faulthandler
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# CIBW_TEST_COMMAND: pytest --pyargs skimage
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- name: Build wheels for CPython (MacOS)
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if: matrix.os == 'macos-latest'
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run: |
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brew install libomp
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python -m cibuildwheel --output-dir dist
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env:
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CIBW_BUILD: "cp3?-*"
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CIBW_SKIP: "cp35-* cp36-* cp39-*"
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CIBW_MANYLINUX_X86_64_IMAGE: manylinux1
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CIBW_MANYLINUX_I686_IMAGE: manylinux1
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# CIBW_BEFORE_BUILD: pip install certifi numpy==1.16
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CC: /usr/bin/clang
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CXX: /usr/bin/clang++
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CPPFLAGS: "-Xpreprocessor -fopenmp"
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CFLAGS: "-Wno-implicit-function-declaration -I/usr/local/opt/libomp/include"
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CXXFLAGS: "-I/usr/local/opt/libomp/include"
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LDFLAGS: "-Wl,-rpath,/usr/local/opt/libomp/lib -L/usr/local/opt/libomp/lib -lomp"
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# CIBW_TEST_REQUIRES: pytest pooch pytest-localserver pytest-faulthandler
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# CIBW_TEST_COMMAND: pytest --pyargs skimage
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- name: Build wheels for CPython 3.6
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run: |
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python -m cibuildwheel --output-dir dist
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env:
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CIBW_BUILD: "cp36-*"
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CIBW_MANYLINUX_X86_64_IMAGE: manylinux1
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CIBW_MANYLINUX_I686_IMAGE: manylinux1
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# CIBW_BEFORE_BUILD: pip install certifi numpy==1.16
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if: >
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startsWith(github.ref, 'refs/heads/v0.17') ||
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startsWith(github.ref, 'refs/tags/v0.17')
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- uses: actions/upload-artifact@v2
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with:
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name: wheels
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path: ./dist/*.whl
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build_windows_wheels:
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name: Build wheels on ${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: [windows-latest]
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steps:
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- uses: actions/checkout@v2
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with:
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fetch-depth: 0
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- uses: actions/setup-python@v2
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name: Install Python
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with:
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python-version: '3.7'
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- name: Install cibuildwheel
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run: |
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python -m pip install cibuildwheel
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- name: Build wheels for CPython 3.9 (Linux and Windows)
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run: |
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python -m cibuildwheel --output-dir dist
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env:
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CIBW_BUILD: "cp39-*"
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CIBW_MANYLINUX_X86_64_IMAGE: manylinux1
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CIBW_MANYLINUX_I686_IMAGE: manylinux1
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# CIBW_BEFORE_BUILD: pip install certifi numpy==1.19.3
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# CIBW_TEST_REQUIRES: pytest pooch pytest-localserver pytest-faulthandler
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# CIBW_TEST_COMMAND: pytest --pyargs skimage
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- name: Build Windows wheels for CPython
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run: |
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python -m cibuildwheel --output-dir dist
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env:
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CIBW_BUILD: "cp3?-*"
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CIBW_SKIP: "cp35-* cp36-* cp39-*"
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CIBW_MANYLINUX_X86_64_IMAGE: manylinux1
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CIBW_MANYLINUX_I686_IMAGE: manylinux1
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# CIBW_BEFORE_BUILD: pip install certifi numpy==1.16
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# CIBW_TEST_REQUIRES: pytest pooch pytest-localserver pytest-faulthandler
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# CIBW_TEST_COMMAND: pytest --pyargs skimage
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- name: Build wheels for CPython 3.6
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run: |
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python -m cibuildwheel --output-dir dist
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env:
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CIBW_BUILD: "cp36-*"
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CIBW_MANYLINUX_X86_64_IMAGE: manylinux1
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CIBW_MANYLINUX_I686_IMAGE: manylinux1
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# CIBW_BEFORE_BUILD: pip install certifi numpy==1.16
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if: >
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startsWith(github.ref, 'refs/heads/v0.17') ||
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startsWith(github.ref, 'refs/tags/v0.17')
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- uses: actions/upload-artifact@v2
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with:
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name: wheels
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path: ./dist/*.whl
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build_sdist:
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name: Build source distribution
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: [3.5, 3.6, 3.7, 3.8]
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steps:
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- uses: actions/checkout@v2
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- uses: actions/setup-python@v2
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name: Install Python
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install cibuildwheel
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run: |
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python -m pip install --upgrade pip
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python -m pip install -r requirements.txt
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python -m pip install cibuildwheel
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pip install --upgrade cython
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- name: Build sdist
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run: python setup.py sdist
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- uses: actions/upload-artifact@v2
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with:
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path: dist/*.tar.gz
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name: distribution_archive
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# conda_build:
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# needs: [build_linux_37_and_above_wheels, build_macos_wheels, build_windows_wheels]
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# runs-on: ubuntu-latest
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# strategy:
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# matrix:
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# python-version: [3.5, 3.6, 3.7, 3.8]
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# upload_all:
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# needs: [make_sdist]
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# runs-on: ubuntu-latest
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# if: github.event_name == 'release'
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#
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# - uses: actions/download-artifact@v2
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# with:
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# name: artifact
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# path: dist
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#
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# - uses: pypa/[email protected]
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# with:
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# user: __token__
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# password: ${{ secrets.pypi_password }}
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‎.gitignore‎

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.Rproj.user
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.Rhistory
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.RData
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.Ruserdata
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btbpy.Rproj

‎README.md‎

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### Contributions
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Developer and maintainer of `btbpy` package
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Julien Jamme, <[email protected]>
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Developer and maintainer of `btbpy` package :
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* Julien Jamme, <[email protected]>
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* [Lino Galiana](https://github.com/linogaliana/)
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* François Sémécurbe
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Authors and Contributors of R `btb` package:
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Arlindo Dos Santos [cre],
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Francois Semecurbe [drt, aut],
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François Sémécurbe [drt, aut],
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Auriane Renaud [ctb],
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Farida Marouchi [ctb]
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Joachim Timoteo [ctb]
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#### What do `btbpy` and `btb` do ?
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The kernelSmoothing() function allows you to square and smooth geolocated data. It calculates a classical kernel smoothing (conservative) or a geographically weighted median. There are only two major call modes of the function. The smoothing with quantiles method is not available on the btbpy package.
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The first call mode is kernelSmoothing(obs, epsg, cellsize, bandwith) for a classical kernel smoothing and automatic grid.
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The second call mode is kernelSmoothing(obs, epsg, cellsize, bandwith, centroids) for a classical kernel smoothing and user grid.
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The `kernelSmoothing()` function allows you to square and smooth geolocated data. It calculates a classical kernel smoothing (conservative) or a geographically weighted median. There are only two major call modes of the function. The smoothing with quantiles method is not available on the `btbpy` package.
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The first call mode is `kernelSmoothing(obs, epsg, cellsize, bandwith)` for a classical kernel smoothing and automatic grid.
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The second call mode is `kernelSmoothing(obs, epsg, cellsize, bandwith, centroids)` for a classical kernel smoothing and user grid.
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Geographically weighted summary statistics : a framework for localised exploratory data analysis, C.Brunsdon & al., in Computers, Environment and Urban Systems C.Brunsdon & al. (2002) <doi:10.1016/S0198-9715(01)00009-6>,
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Statistical Analysis of Spatial and Spatio-Temporal Point Patterns, Third Edition, Diggle, pp. 83-86, (2003) <doi:10.1080/13658816.2014.937718>.

‎pyproject.toml‎

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[build-system]
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requires = [
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"setuptools>=42",
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"wheel",
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"Cython>=0.28.5",
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# use oldest-supported-numpy which provides the oldest numpy version with
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# wheels on PyPI
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#
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# see: https://github.com/scipy/oldest-supported-numpy/blob/master/setup.cfg
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"oldest-supported-numpy"
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]
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build-backend = "setuptools.build_meta"

‎recipe/bld.bat‎

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"%PYTHON%" setup.py install
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if errorlevel 1 exit 1

‎recipe/bld.sh‎

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$PYTHON setup.py install # Python command to install the script.

‎recipe/meta.yaml‎

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{% set name = "btbpy" %}
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{% set version = "0.0.1" %}
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package:
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name: {{ name|lower }}
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version: {{ version }}
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# source:
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# url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
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# sha256: 339175849a62412e6e445be40b1c392ad1194b7c97746492010e7d3e26045814
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build:
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skip: true # [win]
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number: 0
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script: {{ PYTHON }} -m pip install btbpy/ -vv
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requirements:
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build:
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- {{ compiler('cxx') }}
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host:
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- python
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- pip
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- Cython
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- numpy
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- pandas
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- geopandas
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run:
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- python
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- Cython
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- numpy
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- pandas
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- geopandas
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test:
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imports:
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- btbpy
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about:
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home: "https://github.com/linogaliana/btbpy"
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license: GPL-3.0+
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license_family: GPL
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license_file: LICENSE
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summary: "Kernel and density smoothing"
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doc_url: https://btbpy.readthedocs.io/
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extra:
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recipe-maintainers:
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- linogaliana

‎requirements.txt‎

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numpy
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Cython
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pandas
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geopandas

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