ENH: Bump ITK and replace http with https using script

Author: tbirdso

.clang-format

@@ -4,7 +4,7 @@
 ## See: https://clang.llvm.org/docs/ClangFormatStyleOptions.html for details of each option
 ##
 ## The clang-format binaries can be downloaded as part of the clang binary distributions
-## from http://releases.llvm.org/download.html
+## from https://releases.llvm.org/download.html
 ##
 ## Use the script Utilities/Maintenance/clang-format.bash to faciliate
 ## maintaining a consistent code style.

.github/workflows/build-test-package.yml

@@ -13,17 +13,17 @@ jobs:
           - os: ubuntu-18.04
             c-compiler: "gcc"
             cxx-compiler: "g++"
-            itk-git-tag: "a89145bccda6a36f42cfdd45d3a6b27234ff54fe"
+            itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
             cmake-build-type: "MinSizeRel"
           - os: windows-2019
             c-compiler: "cl.exe"
             cxx-compiler: "cl.exe"
-            itk-git-tag: "a89145bccda6a36f42cfdd45d3a6b27234ff54fe"
+            itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
             cmake-build-type: "Release"
           - os: macos-10.15
             c-compiler: "clang"
             cxx-compiler: "clang++"
-            itk-git-tag: "a89145bccda6a36f42cfdd45d3a6b27234ff54fe"
+            itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
             cmake-build-type: "MinSizeRel"
 
     steps:
@@ -134,9 +134,9 @@ jobs:
     strategy:
       max-parallel: 2
       matrix:
-        python-version: [36, 37, 38, 39]
+        python-version: [37, 38, 39, 310]
         include:
-          - itk-python-git-tag: "v5.2.0.post2"
+          - itk-python-git-tag: "v5.3rc04"
 
     steps:
     - uses: actions/checkout@v2
@@ -172,7 +172,7 @@ jobs:
       max-parallel: 2
       matrix:
         include:
-          - itk-python-git-tag: "v5.2.0.post2"
+          - itk-python-git-tag: "v5.3rc04"
 
     steps:
     - uses: actions/checkout@v2
@@ -206,9 +206,9 @@ jobs:
     strategy:
       max-parallel: 2
       matrix:
-        python-version-minor: [6, 7, 8, 9]
+        python-version-minor: [7, 8, 9, 10]
         include:
-          - itk-python-git-tag: "v5.2.0.post2"
+          - itk-python-git-tag: "v5.3rc04"
 
     steps:
     - name: Get specific version of CMake, Ninja
@@ -241,7 +241,7 @@ jobs:
       run: |
         cd ../../im
         call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
-        set PATH="C:\P\grep;%PATH%"
+        set PATH=C:\P\grep;%PATH%
         set CC=cl.exe
         set CXX=cl.exe
         C:\Python3${{ matrix.python-version-minor }}-x64\python.exe C:\P\IPP\scripts\windows_build_module_wheels.py --py-envs "3${{ matrix.python-version-minor }}-x64" --no-cleanup

LICENSE

@@ -1,7 +1,7 @@
 
                                  Apache License
                            Version 2.0, January 2004
-                        http://www.apache.org/licenses/
+                        https://www.apache.org/licenses/
 
    TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
 
@@ -193,7 +193,7 @@
    you may not use this file except in compliance with the License.
    You may obtain a copy of the License at
 
-       http://www.apache.org/licenses/LICENSE-2.0
+       https://www.apache.org/licenses/LICENSE-2.0
 
    Unless required by applicable law or agreed to in writing, software
    distributed under the License is distributed on an "AS IS" BASIS,

README.rst

@@ -14,18 +14,18 @@ ITKBoneMorphometry
 Overview
 --------
 
-This is a module for the `Insight Toolkit (ITK) <http://itk.org>`_ that
+This is a module for the `Insight Toolkit (ITK) <https://itk.org>`_ that
 provides filters that `quantify bone morphometry
 <http://www.b-cube.ch/index.php?option=com_content&view=article&id=22&Itemid=20>`_
 from computed tomography (CT) images.
 
-For more information, see the `Insight Journal article <http://hdl.handle.net/10380/3588>`_::
+For more information, see the `Insight Journal article <https://hdl.handle.net/10380/3588>`_::
 
   Vimort J., McCormick M., Paniagua B.
   Computing Bone Morphometric Feature Maps from 3-Dimensional Images
   The Insight Journal. January-December. 2017.
-  http://hdl.handle.net/10380/3588
-  http://insight-journal.org/browse/publication/988
+  https://hdl.handle.net/10380/3588
+  https://insight-journal.org/browse/publication/988
 
 Installation
 ------------

doc/InsightArticle.cls

@@ -76,11 +76,11 @@
 
 % Define command to make reference to on-line Doxygen documentation
 \newcommand{\doxygen}[1]{
-\href{http://www.itk.org/Doxygen/html/classitk_1_1#1.html}{\code{itk::#1}}}  
+\href{https://www.itk.org/Doxygen/html/classitk_1_1#1.html}{\code{itk::#1}}}  
 
 % Define command to make reference to on-line Doxygen documentation
 \newcommand{\subdoxygen}[2]{
-\href{http://www.itk.org/Doxygen/html/classitk_1_1#1_1_1#2.html}{\code{itk::#1::#2}}}  
+\href{https://www.itk.org/Doxygen/html/classitk_1_1#1_1_1#2.html}{\code{itk::#1::#2}}}  
 
 % Define command for the standard comment introducing classes with similar functionalities
 \newcommand{\relatedClasses}{

doc/InsightJournal.bib

@@ -50,7 +50,7 @@ @Article{textureFeat1
   Author         = "J. Vimort, M. McCormick, F. Budin B. Paniagua",
   Title          = "Computing Textural Feature Maps for N-Dimensional images",
   Journal        = "Insight Journal",
-  Address        = "http://www.insight-journal.org/browse/publication/985",
+  Address        = "https://www.insight-journal.org/browse/publication/985",
   year           = 2017,
 }
 
@@ -137,7 +137,7 @@ @InProceedings{Whitaker1994c
 
 @Manual{POVRay,
   Title          = "Persistence of Vision, Ray-Tracer",
-  Address        = "http://www.povray.org",
+  Address        = "https://www.povray.org",
 }
 
 @Book{Romeny1994,
@@ -157,7 +157,7 @@ @Book{ToErrIsHuman2001
 @TechReport{Aisemberg,
   Author         = "G.O. Aisemberg",
   Title          = "Vertebrate embryology",
-  Address        = "http://lcw.lehman.edu/lehman/depts/biology/aisemberg/Bio268.html",
+  Address        = "https://lcw.lehman.edu/lehman/depts/biology/aisemberg/Bio268.html",
   Institution    = "Department of Biological Sciences. Lehman College,
                    City University of New York",
   year           = 1998,
@@ -860,7 +860,7 @@ @TechReport{Culver1999
   Title          = "Intrinsic scale for boundary representation of
                    two-dimensional objects",
   Institution    = "MIDAG, University of North Carolina at Chapel Hill",
-  annote         = "http://www.cs.unc.edu/~culver",
+  annote         = "https://www.cs.unc.edu/~culver",
   year           = 1999,
 }
 
@@ -934,7 +934,7 @@ @TechReport{Deriche1993
 @Book{Darwin1999,
   Author         = "C. Darwin",
   Title          = "On the Origin of Species",
-  Publisher      = "http://www.gutenberg.org",
+  Publisher      = "https://www.gutenberg.org",
   Edition        = "sixth",
   year           = 1999,
 }
@@ -1898,8 +1898,8 @@ @Manual{ITKSoftwareGuide
   Title          = {The {ITK} {S}oftware {G}uide},
   Author         = {Ibanez, L. and Schroeder, W. and Ng, L. and Cates, J.},
   Organization   = "Kitware, Inc. ISBN 1-930934-10-6",
-  Address        = {http://www.itk.org/ItkSoftwareGuide.pdf},
-  url            = {http://www.itk.org/ItkSoftwareGuide.pdf},
+  Address        = {https://www.itk.org/ItkSoftwareGuide.pdf},
+  url            = {https://www.itk.org/ItkSoftwareGuide.pdf},
   Publisher      = {Kitware Inc.},
   Edition        = {First},
   year           = 2003,
@@ -1909,8 +1909,8 @@ @Manual{ITKSoftwareGuideSecondEdition
   Title          = {The {ITK} {S}oftware {G}uide},
   Author         = {Ibanez, L. and Schroeder, W. and Ng, L. and Cates, J.},
   Organization   = "Kitware, Inc. ISBN 1-930934-15-7",
-  Address        = {http://www.itk.org/ItkSoftwareGuide.pdf},
-  url            = {http://www.itk.org/ItkSoftwareGuide.pdf},
+  Address        = {https://www.itk.org/ItkSoftwareGuide.pdf},
+  url            = {https://www.itk.org/ItkSoftwareGuide.pdf},
   Publisher      = {Kitware Inc.},
   Edition        = {Second},
   year           = 2005,
@@ -3571,7 +3571,7 @@ @Manual{OpenGLSpecification
   Title          = "The OpenGL Graphics System: A Specification (Version
                    1.2)",
   Author         = "M. Segal and K. Akeley",
-  Address        = "http://www.opengl.org",
+  Address        = "https://www.opengl.org",
   month          = "march",
   year           = 1998,
 }
@@ -3989,7 +3989,7 @@ @TechReport{Udupa1998
   Author         = "J. K. Udupa and S. Samarasekera",
   Title          = "Extraction of fuzzy object information in multidimensional images for quantifying MS lesions of the brain",
   year           = 1998,
-  Institution    = "United States Patent Office http://www.uspto.gov",
+  Institution    = "United States Patent Office https://www.uspto.gov",
   Number         = "5,812,691"
 }
 
@@ -4884,7 +4884,7 @@ @Manual{CreatisINSA-Lyon
   Title          = "The GDCM Library",
   Institution    = "CREATIS (France)",
   Organization   = "CNRS, INSERM, INSA Lyon, UCB Lyon",
-  Address        = "http://www.creatis.insa-lyon.fr/Public/Gdcm/"
+  Address        = "https://www.creatis.insa-lyon.fr/Public/Gdcm/"
 }
 
 @InProceedings{Chung2002,
@@ -4907,7 +4907,7 @@ @TechReport{DICOMStandard
   Author         = "NEMA",
   Title          = "The DICOM Standard",
   Institution    = "NEMA",
-  Address        = "\url{http://dicom.nema.org/}",
+  Address        = "\url{https://dicom.nema.org/}",
   Publisher      = "National Electical Manufacturers Association",
   Year           = 2014
 }
@@ -4935,7 +4935,7 @@ @Manual{OpenJPEG
   Title          = "OpenJPEG",
   Institution    = "Communications and Remote Sensing Laboratory (TELE)",
   Organization   = "Universit\'{e} Catholique de Louvain (UCL), Belgium",
-  Address        = "http://www.openjpeg.org"
+  Address        = "https://www.openjpeg.org"
 }
 
 @TechReport{JPEG2000KeyAdvantages,
@@ -4944,7 +4944,7 @@ @TechReport{JPEG2000KeyAdvantages
   Institution    = "Aware Inc.",
   Year           = 2002,
   Month          = "February",
-  Address        = "http://medical.nema.org/Dicom/minutes/WG-04/2002/2002-02-27/Weisfeiler.doc"
+  Address        = "https://medical.nema.org/Dicom/minutes/WG-04/2002/2002-02-27/Weisfeiler.doc"
 }
 
 @inproceedings{ marcellin00overview,

doc/InsightJournal.sty

@@ -1108,11 +1108,11 @@
 %  Commands for adding the link reference to the URL in the Insight Journal
 %
 \newcommand{\urlhandle}[1]{
-\url{http://hdl.handle.net/10380/#1}}  
+\url{https://hdl.handle.net/10380/#1}}  
 
 \newcommand{\IJhandle}[1]{
-Latest version available at the \href{http://www.insight-journal.org}{Insight Journal} [\urlhandle{#1}]\\
-Distributed under \href{http://creativecommons.org/licenses/by/3.0/us/}{Creative Commons Attribution License}}
+Latest version available at the \href{https://www.insight-journal.org}{Insight Journal} [\urlhandle{#1}]\\
+Distributed under \href{https://creativecommons.org/licenses/by/3.0/us/}{Creative Commons Attribution License}}
 
 \newcommand{\IJhandlefooter}[1]{
 \fancyfoot[CO,CE]{

doc/itkBoneMorphometry.tex

@@ -4,7 +4,7 @@
 % of the standard documentation for Insight.  It may be found online
 % at:
 %
-%     http://www.itk.org/
+%     https://www.itk.org/
 
 \documentclass{InsightArticle}
 

include/itkBoneMorphometryFeaturesFilter.h

@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

include/itkBoneMorphometryFeaturesFilter.hxx

@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,