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Merge pull request #378 from N-Dekker/ITK_Example02_CustomOrMultipleParameterMaps-WriteParameterFile-fixes
CustomOrMultipleParameterMaps example: Update output and call `WriteParameterFile` the static way
2 parents f740ff9 + 13c19fd commit 7394bbe

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-41
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6 files changed

+41
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‎examples/ITK_Example02_CustomOrMultipleParameterMaps.ipynb‎

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@@ -228,14 +228,14 @@
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"outputs": [],
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"source": [
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"# Save custom parameter map\n",
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"parameter_object.WriteParameterFile(\n",
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"itk.ParameterObject.WriteParameterFile(\n",
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" parameter_map_custom, \"exampleoutput/parameters_custom.txt\"\n",
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")\n",
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"\n",
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"# Or serialize each parameter map to a file.\n",
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"for index in range(parameter_object.GetNumberOfParameterMaps()):\n",
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" parameter_map = parameter_object.GetParameterMap(index)\n",
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" parameter_object.WriteParameterFile(\n",
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" itk.ParameterObject.WriteParameterFile(\n",
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" parameter_map, \"exampleoutput/Parameters.{0}.txt\".format(index)\n",
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" )"
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]

‎examples/exampleoutput/Parameters.0.txt‎

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@@ -1,19 +1,19 @@
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(AutomaticParameterEstimation "true")
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(AutomaticScalesEstimation "true")
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(CheckNumberOfSamples "true")
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(DefaultPixelValue 0.000000)
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(FinalBSplineInterpolationOrder 3.000000)
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(DefaultPixelValue 0)
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(FinalBSplineInterpolationOrder 3)
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(FixedImagePyramid "FixedSmoothingImagePyramid")
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(ImageSampler "RandomCoordinate")
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(Interpolator "LinearInterpolator")
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(MaximumNumberOfIterations 256.000000)
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(MaximumNumberOfSamplingAttempts 8.000000)
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(MaximumNumberOfIterations 256)
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(MaximumNumberOfSamplingAttempts 8)
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(Metric "AdvancedMattesMutualInformation")
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(MovingImagePyramid "MovingSmoothingImagePyramid")
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(NewSamplesEveryIteration "true")
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(NumberOfResolutions 3.000000)
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(NumberOfSamplesForExactGradient 4096.000000)
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(NumberOfSpatialSamples 2048.000000)
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(NumberOfResolutions 3)
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(NumberOfSamplesForExactGradient 4096)
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(NumberOfSpatialSamples 2048)
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(Optimizer "AdaptiveStochasticGradientDescent")
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(Registration "MultiResolutionRegistration")
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(ResampleInterpolator "FinalBSplineInterpolator")

‎examples/exampleoutput/Parameters.1.txt‎

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(AutomaticParameterEstimation "true")
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(CheckNumberOfSamples "true")
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(DefaultPixelValue 0.000000)
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(FinalBSplineInterpolationOrder 3.000000)
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(DefaultPixelValue 0)
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(FinalBSplineInterpolationOrder 3)
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(FinalGridSpacingInPhysicalUnits 20.000000)
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(FixedImagePyramid "FixedSmoothingImagePyramid")
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(GridSpacingSchedule 1.988100 1.410000 1.000000)
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(GridSpacingSchedule 2 1.4142135623730951 1)
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(ImageSampler "RandomCoordinate")
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(Interpolator "LinearInterpolator")
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(MaximumNumberOfIterations 256.000000)
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(MaximumNumberOfSamplingAttempts 8.000000)
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(MaximumNumberOfIterations 256)
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(MaximumNumberOfSamplingAttempts 8)
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(Metric "AdvancedMattesMutualInformation" "TransformBendingEnergyPenalty")
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(Metric0Weight 1.000000)
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(Metric1Weight 1.000000)
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(Metric0Weight 1.0)
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(Metric1Weight 1.0)
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(MovingImagePyramid "MovingSmoothingImagePyramid")
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(NewSamplesEveryIteration "true")
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(NumberOfResolutions 3.000000)
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(NumberOfSamplesForExactGradient 4096.000000)
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(NumberOfSpatialSamples 2048.000000)
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(NumberOfResolutions 3)
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(NumberOfSamplesForExactGradient 4096)
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(NumberOfSpatialSamples 2048)
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(Optimizer "AdaptiveStochasticGradientDescent")
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(Registration "MultiMetricMultiResolutionRegistration")
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(ResampleInterpolator "FinalBSplineInterpolator")

‎examples/exampleoutput/Parameters.2.txt‎

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@@ -1,21 +1,21 @@
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(BSplineInterpolationOrder 1.000000)
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(DefaultPixelValue 0.000000)
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(BSplineInterpolationOrder 1)
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(DefaultPixelValue 0)
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(ErodeMask "false")
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(FinalBSplineInterpolationOrder 3.000000)
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(FinalGridSpacingInPhysicalUnits 16.000000)
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(FinalBSplineInterpolationOrder 3)
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(FinalGridSpacingInPhysicalUnits 16)
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(FixedImagePyramid "FixedRecursiveImagePyramid")
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(FixedInternalImagePixelType "float")
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(HowToCombineTransforms "Compose")
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(ImageSampler "Random")
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(Interpolator "BSplineInterpolator")
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(MaximumNumberOfIterations 500.000000)
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(MaximumNumberOfIterations 500)
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(Metric "AdvancedMattesMutualInformation")
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(MovingImagePyramid "MovingRecursiveImagePyramid")
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(MovingInternalImagePixelType "float")
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(NewSamplesEveryIteration "true")
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(NumberOfHistogramBins 32.000000)
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(NumberOfResolutions 1.000000)
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(NumberOfSpatialSamples 2048.000000)
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(NumberOfHistogramBins 32)
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(NumberOfResolutions 1)
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(NumberOfSpatialSamples 2048)
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(Optimizer "AdaptiveStochasticGradientDescent")
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(Registration "MultiResolutionRegistration")
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(ResampleInterpolator "FinalBSplineInterpolator")

‎examples/exampleoutput/Parameters.3.txt‎

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(AutomaticParameterEstimation "true")
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(AutomaticScalesEstimation "true")
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(CheckNumberOfSamples "true")
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(DefaultPixelValue 0.000000)
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(FinalBSplineInterpolationOrder 3.000000)
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(DefaultPixelValue 0)
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(FinalBSplineInterpolationOrder 3)
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(FixedImagePyramid "FixedSmoothingImagePyramid")
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(ImageSampler "RandomCoordinate")
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(Interpolator "LinearInterpolator")
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(MaximumNumberOfIterations 256.000000)
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(MaximumNumberOfSamplingAttempts 8.000000)
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(MaximumNumberOfIterations 256)
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(MaximumNumberOfSamplingAttempts 8)
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(Metric "AdvancedMattesMutualInformation")
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(MovingImagePyramid "MovingSmoothingImagePyramid")
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(NewSamplesEveryIteration "true")
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(NumberOfResolutions 4.000000)
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(NumberOfSamplesForExactGradient 4096.000000)
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(NumberOfSpatialSamples 2048.000000)
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(NumberOfResolutions 4)
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(NumberOfSamplesForExactGradient 4096)
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(NumberOfSpatialSamples 2048)
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(Optimizer "AdaptiveStochasticGradientDescent")
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(Registration "MultiResolutionRegistration")
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(ResampleInterpolator "FinalBSplineInterpolator")

‎examples/exampleoutput/parameters_custom.txt‎

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Original file line numberDiff line numberDiff line change
@@ -1,19 +1,19 @@
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(AutomaticParameterEstimation "true")
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(AutomaticScalesEstimation "true")
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(CheckNumberOfSamples "true")
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(DefaultPixelValue 0.000000)
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(FinalBSplineInterpolationOrder 3.000000)
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(DefaultPixelValue 0)
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(FinalBSplineInterpolationOrder 3)
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(FixedImagePyramid "FixedSmoothingImagePyramid")
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(ImageSampler "RandomCoordinate")
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(Interpolator "LinearInterpolator")
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(MaximumNumberOfIterations 256.000000)
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(MaximumNumberOfSamplingAttempts 8.000000)
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(MaximumNumberOfIterations 256)
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(MaximumNumberOfSamplingAttempts 8)
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(Metric "AdvancedMattesMutualInformation")
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(MovingImagePyramid "MovingSmoothingImagePyramid")
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(NewSamplesEveryIteration "true")
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(NumberOfResolutions 4.000000)
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(NumberOfSamplesForExactGradient 4096.000000)
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(NumberOfSpatialSamples 2048.000000)
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(NumberOfResolutions 4)
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(NumberOfSamplesForExactGradient 4096)
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(NumberOfSpatialSamples 2048)
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(Optimizer "AdaptiveStochasticGradientDescent")
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(Registration "MultiResolutionRegistration")
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(ResampleInterpolator "FinalBSplineInterpolator")

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