ENH: update to ITK 5.3.0 (#38)

dyollb · web-flow · commit 7e23b12be913 · 2023-02-14T14:39:54.000-05:00
Co-authored-by: Bryn Lloyd &lt;lloyd@itis.swiss&gt;
diff --git a/.github/workflows/build-test-package.yml b/.github/workflows/build-test-package.yml
@@ -3,276 +3,10 @@ name: Build, test, package
 on: [push,pull_request]
 
 jobs:
-  build-test-cxx:
-    runs-on: ${{ matrix.os }}
-    strategy:
-      max-parallel: 3
-      matrix:
-        os: [ubuntu-18.04, windows-2019, macos-10.15]
-        include:
-          - os: ubuntu-18.04
-            c-compiler: "gcc"
-            cxx-compiler: "g++"
-            itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
-            cmake-build-type: "MinSizeRel"
-          - os: windows-2019
-            c-compiler: "cl.exe"
-            cxx-compiler: "cl.exe"
-            itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
-            cmake-build-type: "Release"
-          - os: macos-10.15
-            c-compiler: "clang"
-            cxx-compiler: "clang++"
-            itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
-            cmake-build-type: "MinSizeRel"
+  cxx-build-workflow:
+    uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-cxx.yml@5083da2740617b78423ebf6083489e1e70ee8ca0
 
-    steps:
-      - uses: actions/checkout@v1
-
-      - name: Set up Python 3.7
-        uses: actions/setup-python@v1
-        with:
-          python-version: 3.7
-
-      - name: Install build dependencies
-        run: |
-          python -m pip install --upgrade pip
-          python -m pip install ninja
-
-      - name: Get specific version of CMake, Ninja
-        uses: lukka/get-cmake@v3.18.3
-
-      - name: Download ITK
-        run: |
-          cd ..
-          git clone https://github.com/InsightSoftwareConsortium/ITK.git
-          cd ITK
-          git checkout ${{ matrix.itk-git-tag }}
-
-      - name: Build ITK
-        if: matrix.os != 'windows-2019'
-        run: |
-          cd ..
-          mkdir ITK-build
-          cd ITK-build
-          cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK
-          ninja
-
-      - name: Build ITK
-        if: matrix.os == 'windows-2019'
-        run: |
-          cd ..
-          mkdir ITK-build
-          cd ITK-build
-          call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
-          cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK
-          ninja
-        shell: cmd
-
-      - name: Fetch CTest driver script
-        run: |
-          curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O
-
-      - name: Configure CTest script
-        shell: bash
-        run: |
-          operating_system="${{ matrix.os }}"
-          cat > dashboard.cmake << EOF
-          set(CTEST_SITE "GitHubActions")
-          file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT)
-          file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/" CTEST_SOURCE_DIRECTORY)
-          file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../build" CTEST_BINARY_DIRECTORY)
-          set(dashboard_source_name "${GITHUB_REPOSITORY}")
-          if(ENV{GITHUB_REF} MATCHES "master")
-            set(branch "-master")
-            set(dashboard_model "Continuous")
-          else()
-            set(branch "-${GITHUB_REF}")
-            set(dashboard_model "Experimental")
-          endif()
-          set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}")
-          set(CTEST_UPDATE_VERSION_ONLY 1)
-          set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL})
-          set(CTEST_BUILD_CONFIGURATION "Release")
-          set(CTEST_CMAKE_GENERATOR "Ninja")
-          set(CTEST_CUSTOM_WARNING_EXCEPTION
-            \${CTEST_CUSTOM_WARNING_EXCEPTION}
-            # macOS Azure VM Warning
-            "ld: warning: text-based stub file"
-            )
-          set(dashboard_no_clean 1)
-          set(ENV{CC} ${{ matrix.c-compiler }})
-          set(ENV{CXX} ${{ matrix.cxx-compiler }})
-          if(WIN32)
-            set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}")
-          endif()
-          set(dashboard_cache "
-          ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-build
-          BUILD_TESTING:BOOL=ON
-          ")
-          string(TIMESTAMP build_date "%Y-%m-%d")
-          message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}")
-          message("CTEST_SITE = \${CTEST_SITE}")
-          include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake)
-          EOF
-          cat dashboard.cmake
-
-      - name: Build and test
-        if: matrix.os != 'windows-2019'
-        run: |
-          ctest --output-on-failure -j 2 -V -S dashboard.cmake
-
-      - name: Build and test
-        if: matrix.os == 'windows-2019'
-        run: |
-          call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
-          ctest --output-on-failure -j 2 -V -S dashboard.cmake
-        shell: cmd
-
-  build-linux-python-packages:
-    runs-on: ubuntu-18.04
-    strategy:
-      max-parallel: 2
-      matrix:
-        python-version: [37, 38, 39, 310]
-        include:
-          - itk-python-git-tag: "v5.3rc04"
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: 'Free up disk space'
-        run: |
-          # Workaround for https://github.com/actions/virtual-environments/issues/709
-          df -h
-          sudo apt-get clean
-          sudo rm -rf "/usr/local/share/boost"
-          sudo rm -rf "$AGENT_TOOLSDIRECTORY"
-          df -h
-
-      - name: 'Fetch build script'
-        run: |
-          curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/dockcross-manylinux-download-cache-and-build-module-wheels.sh -O
-          chmod u+x dockcross-manylinux-download-cache-and-build-module-wheels.sh
-
-      - name: 'Build 🐍 Python 📦 package'
-        run: |
-          export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
-          ./dockcross-manylinux-download-cache-and-build-module-wheels.sh cp${{ matrix.python-version }}
-
-      - name: Publish Python package as GitHub Artifact
-        uses: actions/upload-artifact@v1
-        with:
-          name: LinuxWheel${{ matrix.python-version }}
-          path: dist
-
-  build-macos-python-packages:
-    runs-on: macos-10.15
-    strategy:
-      max-parallel: 2
-      matrix:
-        include:
-          - itk-python-git-tag: "v5.3rc04"
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: 'Specific XCode version'
-        run: |
-          sudo xcode-select -s "/Applications/Xcode_11.7.app"
-
-      - name: Get specific version of CMake, Ninja
-        uses: lukka/get-cmake@v3.18.3
-
-      - name: 'Fetch build script'
-        run: |
-          curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/macpython-download-cache-and-build-module-wheels.sh -O
-          chmod u+x macpython-download-cache-and-build-module-wheels.sh
-
-      - name: 'Build 🐍 Python 📦 package'
-        run: |
-          export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
-          export MACOSX_DEPLOYMENT_TARGET=10.9
-          ./macpython-download-cache-and-build-module-wheels.sh
-
-      - name: Publish Python package as GitHub Artifact
-        uses: actions/upload-artifact@v1
-        with:
-          name: MacOSWheels
-          path: dist
-
-  build-windows-python-packages:
-    runs-on: windows-2019
-    strategy:
-      max-parallel: 2
-      matrix:
-        python-version-minor: [7, 8, 9, 10]
-        include:
-          - itk-python-git-tag: "v5.3rc04"
-
-    steps:
-      - uses: actions/checkout@v2
-        with:
-          path: "im"
-
-      - name: 'Install Python'
-        run: |
-          $pythonArch = "64"
-          $pythonVersion = "3.${{ matrix.python-version-minor }}"
-          iex ((new-object net.webclient).DownloadString('https://raw.githubusercontent.com/scikit-build/scikit-ci-addons/master/windows/install-python.ps1'))
-
-      - name: 'Fetch build dependencies'
-        shell: bash
-        run: |
-          mv im ../../
-          cd ../../im
-          curl -L "https://github.com/InsightSoftwareConsortium/ITKPythonBuilds/releases/download/${{ matrix.itk-python-git-tag }}/ITKPythonBuilds-windows.zip" -o "ITKPythonBuilds-windows.zip"
-          7z x ITKPythonBuilds-windows.zip -o/c/P -aoa -r
-          curl -L "https://data.kitware.com/api/v1/file/5c0ad59d8d777f2179dd3e9c/download" -o "doxygen-1.8.11.windows.bin.zip"
-          7z x doxygen-1.8.11.windows.bin.zip -o/c/P/doxygen -aoa -r
-          curl -L "https://data.kitware.com/api/v1/file/5bbf87ba8d777f06b91f27d6/download/grep-win.zip" -o "grep-win.zip"
-          7z x grep-win.zip -o/c/P/grep -aoa -r
-
-      - name: 'Build 🐍 Python 📦 package'
-        shell: cmd
-        run: |
-          cd ../../im
-          call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
-          set PATH=C:\P\grep;%PATH%
-          set CC=cl.exe
-          set CXX=cl.exe
-          C:\Python3${{ matrix.python-version-minor }}-x64\python.exe C:\P\IPP\scripts\windows_build_module_wheels.py --py-envs "3${{ matrix.python-version-minor }}-x64"
-
-      - name: Publish Python package as GitHub Artifact
-        uses: actions/upload-artifact@v1
-        with:
-          name: WindowsWheel3.${{ matrix.python-version-minor }}
-          path: ../../im/dist
-
-  publish-python-packages-to-pypi:
-    needs:
-      - build-linux-python-packages
-      - build-macos-python-packages
-      - build-windows-python-packages
-    runs-on: ubuntu-18.04
-
-    steps:
-      - name: Download Python Packages
-        uses: actions/download-artifact@v2
-
-      - name: Prepare packages for upload
-        run: |
-          ls -R
-          for d in */; do
-            mv ${d}/*.whl .
-          done
-          mkdir dist
-          mv *.whl dist/
-          ls dist
-
-      - name: Publish 🐍 Python 📦 package to PyPI
-        if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
-        uses: pypa/gh-action-pypi-publish@master
-        with:
-          user: __token__
-          password: ${{ secrets.pypi_password }}
+  python-build-workflow:
+    uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-package-python.yml@5083da2740617b78423ebf6083489e1e70ee8ca0
+    secrets:
+      pypi_password: ${{ secrets.pypi_password }}
diff --git a/.github/workflows/clang-format-linter.yml b/.github/workflows/clang-format-linter.yml
@@ -7,7 +7,6 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v1
-      with:
-        fetch-depth: 1
+    - uses: actions/checkout@v3
+
     - uses: InsightSoftwareConsortium/ITKClangFormatLinterAction@master
diff --git a/setup.py b/setup.py
@@ -1,5 +1,4 @@
 # -*- coding: utf-8 -*-
-from __future__ import print_function
 from os import sys
 
 try:
@@ -13,7 +12,7 @@
 
 setup(
     name='itk-labelerodedilate',
-    version='1.2.0',
+    version='1.2.1',
     author='Richard Beare',
     author_email='Richard.Beare@med.monash.edu.au',
     packages=['itk'],
@@ -51,7 +50,5 @@
     license='Apache',
     keywords='ITK InsightToolkit Math-morphology Label-images',
     url=r'https://github.com/InsightSoftwareConsortium/ITKLabelErodeDilate',
-    install_requires=[
-        r'itk>=5.3rc4'
-    ]
-    )
+    install_requires=[r'itk~=5.3.0']
+)
