Merge pull request #11 from LucasGandel/DashboardErrorFixing

Dashboard error fixing

Author: thewtex

include/itkArrivalFunctionToPathFilter.h

@@ -9,7 +9,7 @@
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
 
-     This software is distributed WITHOUT ANY WARRANTY; without even 
+     This software is distributed WITHOUT ANY WARRANTY; without even
      the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
      PURPOSE.  See the above copyright notices for more information.
 
@@ -30,12 +30,12 @@ namespace itk
 /**
  * \class ArrivalFunctionToPathCommand
  * \brief A command to listen for Optimizer Iteration events.
- * \author Dan Mueller, Queensland University of Technology, 
+ * \author Dan Mueller, Queensland University of Technology,
  * dan.muel[at]gmail.com
  *
  *
  * \ingroup MinimalPathExtraction
- * 
+ *
  */
 
 template <class TFilter>
@@ -49,7 +49,7 @@ class ArrivalFunctionToPathCommand : public itk::Command
 
   /** Method for creation through the object factory. */
   itkNewMacro( Self );
-  
+
   /** Some useful typedefs. */
   typedef TFilter FilterType;
 
@@ -59,13 +59,13 @@ class ArrivalFunctionToPathCommand : public itk::Command
 
   /** Execute */
   void Execute(itk::Object *caller, const itk::EventObject & event)
-  {
+    {
     Execute( (const itk::Object *)caller, event);
-  }
+    }
 
   /** Execute */
   void Execute(const itk::Object * object, const itk::EventObject & event)
-  {
+    {
     if( ! itk::IterationEvent().CheckEvent( &event ) )
       {
       return;
@@ -75,20 +75,20 @@ class ArrivalFunctionToPathCommand : public itk::Command
       {
       m_Filter->Execute( object, event );
       }
-  }
+    }
 
 protected:
   ArrivalFunctionToPathCommand(){}
   ~ArrivalFunctionToPathCommand(){}
-  
+
 private:
   ArrivalFunctionToPathCommand( const Self& );
   void operator = ( const Self& );
 
   typename FilterType::Pointer m_Filter;
 };
 
-  
+
 /** \class ArrivalFunctionToPathFilter
  * \brief Extracts a path from a Fast Marching arrival function.
  *
@@ -130,7 +130,7 @@ class ArrivalFunctionToPathCommand : public itk::Command
  *     Cambridge Press, 2nd edition, 1999.
  * [2] J. Andrews and J. Sethian. Fast marching methods for the continuous
  *     traveling salesman problem. Proceedings of the National Academy of
- *     Sciences (PNAS), 104(4):1118–1123, 2007.
+ *     Sciences (PNAS), 104(4):1118/1123, 2007.
  *
  * \author Dan Mueller, Queensland University of Technology, dan.muel[at]gmail.com
  *
@@ -152,17 +152,17 @@ class ITK_EXPORT ArrivalFunctionToPathFilter :
 
   /** Run-time type information (and related methods). */
   itkTypeMacro(ArrivalFunctionToPathFilter,ImageToPathFilter);
-  
+
   /** Method for creation through the object factory. */
   itkNewMacro(Self);
 
   /** Some image typedefs. */
   typedef TInputImage                             InputImageType;
   typedef typename InputImageType::Pointer        InputImagePointer;
   typedef typename InputImageType::ConstPointer   InputImageConstPointer;
-  typedef typename InputImageType::RegionType     InputImageRegionType; 
+  typedef typename InputImageType::RegionType     InputImageRegionType;
   typedef typename InputImageType::PixelType      InputImagePixelType;
-  
+
   /** Some path typedefs. */
   typedef TOutputPath                             OutputPathType;
   typedef typename OutputPathType::Pointer        OutputPathPointer;
@@ -229,7 +229,7 @@ class ITK_EXPORT ArrivalFunctionToPathFilter :
   /** Get the next end point from which to back propagate. */
   virtual const PointType & GetNextEndPoint( );
 
-  typename CostFunctionType::Pointer m_CostFunction; 
+  typename CostFunctionType::Pointer m_CostFunction;
   typename OptimizerType::Pointer m_Optimizer;
   typename OptimizerType::MeasureType m_TerminationValue;
   std::vector<PointType> m_PointList;

include/itkArrivalFunctionToPathFilter.hxx

@@ -9,8 +9,8 @@
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
 
-     This software is distributed WITHOUT ANY WARRANTY; without even 
-     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+     This software is distributed WITHOUT ANY WARRANTY; without even
+     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
      PURPOSE.  See the above copyright notices for more information.
 
 =========================================================================*/
@@ -176,7 +176,7 @@ ArrivalFunctionToPathFilter<TInputImage,TOutputPath>
     // Set the output index
     // NOTE: m_CurrentOutput is used in Execute() and GetNextEndPoint()
     m_CurrentOutput = n;
-        
+
     // Make the output
     OutputPathPointer output = static_cast<TOutputPath*>( this->MakeOutput(n).GetPointer() );
     this->ProcessObject::SetNthOutput( n, output.GetPointer() );
@@ -201,11 +201,11 @@ ArrivalFunctionToPathFilter<TInputImage,TOutputPath>
 
     // Initialize optimizer
     m_Optimizer->SetInitialPosition( end );
-   
+
     // Use optimizer to back propagate from end point
     m_Optimizer->StartOptimization( );
     }
-    
+
   // Clean up by removing observer
   m_Optimizer->RemoveObserver( observerTag );
 }
@@ -238,7 +238,7 @@ ArrivalFunctionToPathFilter<TInputImage,TOutputPath>
     {
     return;
     }
-      
+
   // Convert parameters to point
   bool valid = false;
   unsigned int numparams = optimizer->GetCurrentPosition().GetSize();
@@ -253,7 +253,7 @@ ArrivalFunctionToPathFilter<TInputImage,TOutputPath>
     {
     return;
     }
-    
+
   // Convert point to continuous index
   InputImagePointer input = const_cast<InputImageType*>( this->GetInput() );
   ContinuousIndexType cindex;
@@ -265,7 +265,7 @@ ArrivalFunctionToPathFilter<TInputImage,TOutputPath>
 }
 
 template<class TInputImage, class TOutputPath>
-void 
+void
 ArrivalFunctionToPathFilter<TInputImage,TOutputPath>
 ::PrintSelf(std::ostream& os, Indent indent) const
 {

include/itkIterateNeighborhoodOptimizer.h

@@ -9,8 +9,8 @@
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
 
-     This software is distributed WITHOUT ANY WARRANTY; without even 
-     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+     This software is distributed WITHOUT ANY WARRANTY; without even
+     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
      PURPOSE.  See the above copyright notices for more information.
 
 =========================================================================*/
@@ -78,7 +78,7 @@ class IterateNeighborhoodOptimizer :
   /** Stop optimization.
    * \sa ResumeOptimization */
   void StopOptimization( void );
-  
+
   /**
    * Get/set whether the nieghborhood is defined by face connectivity or
    * by face+edge+vertex connectivity.  Default is FullyConnectedOn.
@@ -108,7 +108,7 @@ class IterateNeighborhoodOptimizer :
 private:
   IterateNeighborhoodOptimizer(const Self&); //purposely not implemented
   void operator=(const Self&); //purposely not implemented
-  
+
   bool                 m_Stop;
   bool                 m_Maximize;
   bool                 m_FullyConnected;

include/itkPhysicalCentralDifferenceImageFunction.h

@@ -9,8 +9,8 @@
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
 
-     This software is distributed WITHOUT ANY WARRANTY; without even 
-     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+     This software is distributed WITHOUT ANY WARRANTY; without even
+     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
      PURPOSE.  See the above copyright notices for more information.
 
 =========================================================================*/
@@ -39,10 +39,10 @@ namespace itk
  * \ingroup MinimalPathExtraction
  */
 template <
-  class TInputImage, 
+  class TInputImage,
   class TCoordRep = float >
 class ITK_EXPORT PhysicalCentralDifferenceImageFunction :
-  public ImageFunction< TInputImage, 
+  public ImageFunction< TInputImage,
                         CovariantVector<double, TInputImage::ImageDimension>,
                         TCoordRep >
 {
@@ -54,12 +54,12 @@ class ITK_EXPORT PhysicalCentralDifferenceImageFunction :
   /** Standard class typedefs. */
   typedef PhysicalCentralDifferenceImageFunction Self;
   typedef ImageFunction<TInputImage,
-                        CovariantVector<double, 
+                        CovariantVector<double,
                         itkGetStaticConstMacro(ImageDimension)>,
                         TCoordRep>       Superclass;
   typedef SmartPointer<Self>             Pointer;
   typedef SmartPointer<const Self>       ConstPointer;
-  
+
   /** Run-time type information (and related methods). */
   itkTypeMacro(PhysicalCentralDifferenceImageFunction, ImageFunction);
 
@@ -74,17 +74,17 @@ class ITK_EXPORT PhysicalCentralDifferenceImageFunction :
 
   /** Index typedef support. */
   typedef typename Superclass::IndexType IndexType;
-  
+
   /** ContinuousIndex typedef support. */
   typedef typename Superclass::ContinuousIndexType ContinuousIndexType;
 
   /** Point typedef support. */
   typedef typename Superclass::PointType PointType;
-  
+
   /** Linear interpolate function typedef. */
   typedef LinearInterpolateImageFunction<TInputImage, TCoordRep>
      InterpolateImageFunctionType;
-  
+
   /** Set the input image.
    * \warning this method caches BufferedRegion information.
    * If the BufferedRegion has changed, user must call
@@ -118,12 +118,12 @@ class ITK_EXPORT PhysicalCentralDifferenceImageFunction :
    *  bounds before calling this method. */
   virtual OutputType EvaluateAtContinuousIndex(
     const ContinuousIndexType& cindex ) const
-    { 
+    {
     PointType point;
     m_Interpolator->GetInputImage()->TransformContinuousIndexToPhysicalPoint( cindex, point );
     return this->Evaluate( point );
     }
-    
+
   /** Evalulate the image derivative by central differencing at specified
    *  physical point.
    *
@@ -140,7 +140,7 @@ class ITK_EXPORT PhysicalCentralDifferenceImageFunction :
 private:
   PhysicalCentralDifferenceImageFunction( const Self& ); //purposely not implemented
   void operator=( const Self& ); //purposely not implemented
-  
+
   typename InterpolateImageFunctionType::Pointer m_Interpolator;
 
 };

include/itkPhysicalCentralDifferenceImageFunction.hxx

@@ -9,8 +9,8 @@
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
 
-     This software is distributed WITHOUT ANY WARRANTY; without even 
-     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+     This software is distributed WITHOUT ANY WARRANTY; without even
+     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
      PURPOSE.  See the above copyright notices for more information.
 
 =========================================================================*/
@@ -70,7 +70,7 @@ PhysicalCentralDifferenceImageFunction<TInputImage,TCoordRep>
     TCoordRep valueRight = m_Interpolator->Evaluate( pointRight );
 
     // Compute derivative
-    derivative[dim] = (valueRight - valueLeft) * 
+    derivative[dim] = (valueRight - valueLeft) *
                       (0.5 / Superclass::m_Image->GetSpacing()[dim]);
     }
 

include/itkSingleImageCostFunction.h

@@ -9,8 +9,8 @@
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
 
-     This software is distributed WITHOUT ANY WARRANTY; without even 
-     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+     This software is distributed WITHOUT ANY WARRANTY; without even
+     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
      PURPOSE.  See the above copyright notices for more information.
 
 =========================================================================*/
@@ -28,7 +28,7 @@
 
 namespace itk
 {
-  
+
 /** \class SingleImageCostFunction
  * \brief This class is a cost function which queries
  *        an underlying image for the single value.
@@ -37,7 +37,7 @@ namespace itk
  * underlying cost function. The user may also provide an image
  * interpolator (if not provided the LinearInterpolateImageFunction
  * is used by default). The gradient is computed using central
- * differences in physical space. 
+ * differences in physical space.
  *
  * The parameters are the physical location (itkPoint) of the current
  * position. Initialize() must be called before using this cost function.
@@ -48,7 +48,7 @@ namespace itk
  *
  * \ingroup MinimalPathExtraction
  */
-template <class TImage> 
+template <class TImage>
 class ITK_EXPORT SingleImageCostFunction :
     public SingleValuedCostFunction
 {
@@ -72,7 +72,7 @@ class ITK_EXPORT SingleImageCostFunction :
   /** DerivativeType typedef.
    *  It defines a type used to return the cost function derivative. */
   typedef typename Superclass::DerivativeType       DerivativeType;
- 
+
   /** ParametersType typedef.
    *  It defines a position in the optimization search space. */
   typedef typename Superclass::ParametersType       ParametersType;
@@ -116,7 +116,7 @@ class ITK_EXPORT SingleImageCostFunction :
   virtual void Initialize(void) throw ( ExceptionObject );
 
   /** Return the number of parameters required by the Transform */
-  unsigned int GetNumberOfParameters(void) const 
+  unsigned int GetNumberOfParameters(void) const
   { return ImageDimension; }
 
   /** This method returns the value of the cost function corresponding