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lines changed Original file line number Diff line number Diff line change 1+ # =========================================================================
2+ #
3+ # Copyright NumFOCUS
4+ #
5+ # Licensed under the Apache License, Version 2.0 (the "License");
6+ # you may not use this file except in compliance with the License.
7+ # You may obtain a copy of the License at
8+ #
9+ # http://www.apache.org/licenses/LICENSE-2.0.txt
10+ #
11+ # Unless required by applicable law or agreed to in writing, software
12+ # distributed under the License is distributed on an "AS IS" BASIS,
13+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14+ # See the License for the specific language governing permissions and
15+ # limitations under the License.
16+ #
17+ # =========================================================================
118import SimpleITK as sitk
219import matplotlib .pyplot as plt
320import ipywidgets as widgets
Original file line number Diff line number Diff line change 1+ # =========================================================================
2+ #
3+ # Copyright NumFOCUS
4+ #
5+ # Licensed under the Apache License, Version 2.0 (the "License");
6+ # you may not use this file except in compliance with the License.
7+ # You may obtain a copy of the License at
8+ #
9+ # http://www.apache.org/licenses/LICENSE-2.0.txt
10+ #
11+ # Unless required by applicable law or agreed to in writing, software
12+ # distributed under the License is distributed on an "AS IS" BASIS,
13+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14+ # See the License for the specific language governing permissions and
15+ # limitations under the License.
16+ #
17+ # =========================================================================
118import SimpleITK as sitk
219import matplotlib .pyplot as plt
320
Original file line number Diff line number Diff line change 1+ # =========================================================================
2+ #
3+ # Copyright NumFOCUS
4+ #
5+ # Licensed under the Apache License, Version 2.0 (the "License");
6+ # you may not use this file except in compliance with the License.
7+ # You may obtain a copy of the License at
8+ #
9+ # http://www.apache.org/licenses/LICENSE-2.0.txt
10+ #
11+ # Unless required by applicable law or agreed to in writing, software
12+ # distributed under the License is distributed on an "AS IS" BASIS,
13+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14+ # See the License for the specific language governing permissions and
15+ # limitations under the License.
16+ #
17+ # =========================================================================
118"""
219Utilities specific to the POPI data:
320* The label values used in the masks that segment the CT into air/body/lung.
Original file line number Diff line number Diff line change 1+ # =========================================================================
2+ #
3+ # Copyright NumFOCUS
4+ #
5+ # Licensed under the Apache License, Version 2.0 (the "License");
6+ # you may not use this file except in compliance with the License.
7+ # You may obtain a copy of the License at
8+ #
9+ # http://www.apache.org/licenses/LICENSE-2.0.txt
10+ #
11+ # Unless required by applicable law or agreed to in writing, software
12+ # distributed under the License is distributed on an "AS IS" BASIS,
13+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14+ # See the License for the specific language governing permissions and
15+ # limitations under the License.
16+ #
17+ # =========================================================================
118import numpy as np
219import matplotlib .pyplot as plt
320import SimpleITK as sitk
Original file line number Diff line number Diff line change 1+ # =========================================================================
2+ #
3+ # Copyright NumFOCUS
4+ #
5+ # Licensed under the Apache License, Version 2.0 (the "License");
6+ # you may not use this file except in compliance with the License.
7+ # You may obtain a copy of the License at
8+ #
9+ # http://www.apache.org/licenses/LICENSE-2.0.txt
10+ #
11+ # Unless required by applicable law or agreed to in writing, software
12+ # distributed under the License is distributed on an "AS IS" BASIS,
13+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14+ # See the License for the specific language governing permissions and
15+ # limitations under the License.
16+ #
17+ # =========================================================================
118import numpy as np
219from scipy import linalg
320import matplotlib .pyplot as plt
Original file line number Diff line number Diff line change 1+ # =========================================================================
2+ #
3+ # Copyright NumFOCUS
4+ #
5+ # Licensed under the Apache License, Version 2.0 (the "License");
6+ # you may not use this file except in compliance with the License.
7+ # You may obtain a copy of the License at
8+ #
9+ # http://www.apache.org/licenses/LICENSE-2.0.txt
10+ #
11+ # Unless required by applicable law or agreed to in writing, software
12+ # distributed under the License is distributed on an "AS IS" BASIS,
13+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14+ # See the License for the specific language governing permissions and
15+ # limitations under the License.
16+ #
17+ # =========================================================================
118#
219# If we are in a continuous testing environment that is memory constrained,
320# for instance CircleCI which limits memory to 4Gb. We override the ReadImage
Original file line number Diff line number Diff line change 1+ # =========================================================================
2+ #
3+ # Copyright NumFOCUS
4+ #
5+ # Licensed under the Apache License, Version 2.0 (the "License");
6+ # you may not use this file except in compliance with the License.
7+ # You may obtain a copy of the License at
8+ #
9+ # http://www.apache.org/licenses/LICENSE-2.0.txt
10+ #
11+ # Unless required by applicable law or agreed to in writing, software
12+ # distributed under the License is distributed on an "AS IS" BASIS,
13+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14+ # See the License for the specific language governing permissions and
15+ # limitations under the License.
16+ #
17+ # =========================================================================
118import sys , os
219
320download_script_location = os .path .abspath (os .path .join (".." , "Utilities" ))
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