Merge pull request #420 from InsightSoftwareConsortium/requirements-updates

Author: thewtex

.binder/postBuild

@@ -6,6 +6,3 @@ pip install .
 # add itkwidgets
 jupyter nbextension install --py --sys-prefix itkwidgets
 jupyter nbextension enable --py --sys-prefix itkwidgets
-cd /tmp/
-jupyter labextension install @jupyter-widgets/jupyterlab-manager
-jupyter labextension install jupyter-matplotlib jupyterlab-datawidgets jupyter-webrtc itkwidgets [email protected] [email protected]

.circleci/config.yml

@@ -9,8 +9,56 @@ jobs:
     steps:
       - uses: actions/checkout@v2
       - uses: actions/setup-python@v2
-      - uses: treebeardtech/[email protected]
         with:
-          docker-username: thewtex
+          python-version: 3.8
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install --upgrade setuptools wheel
+          pip install -r requirements.txt -r requirements-dev.txt PySide2
+      - name: Install package and extension
+        run: |
+          python -m pip install -e .
+          jupyter nbextension install --py --symlink --sys-prefix itkwidgets
+          jupyter nbextension enable --py --sys-prefix itkwidgets
+          jupyter nbextension enable --py --sys-prefix widgetsnbextension
+        env:
+          MPLBACKEND: Qt5Agg
+      - uses: treebeardtech/[email protected]
+        with:
+          docker-username: "${{ secrets.DOCKER_USERNAME }}"
           docker-password: "${{ secrets.DOCKER_PASSWORD }}"
           docker-image-name: insighttoolkit/itkwidgets
+          notebooks: |
+            examples/2DImage.ipynb
+            examples/3DImage.ipynb
+            examples/CameraParameters.ipynb
+            examples/Checkerboard.ipynb
+            examples/CompareImages.ipynb
+            examples/DaskArray.ipynb
+            examples/ImageLabelStatistics.ipynb
+            examples/ImageWithAnisotropicPixelSpacing.ipynb
+            examples/InteractiveParameterExploration.ipynb
+            examples/LabelImages.ipynb
+            examples/LineProfile.ipynb
+            examples/Mesh.ipynb
+            examples/NumPyArrayImage.ipynb
+            examples/NumPyArrayPointSet.ipynb
+            examples/PointBasedSpatialObject.ipynb
+            examples/pyvista.PolyData.ipynb
+            examples/pyvista.PolyDataAndImageData.ipynb
+            examples/pyvista.StructuredGrid.ipynb
+            examples/pyvista.UniformGrid.ipynb
+            examples/pyvista.UnstructuredGrid.ipynb
+            examples/pyvistaLiDAR.ipynb
+            examples/RecordAVideo.ipynb
+            examples/scikit-image.ipynb
+            examples/SegmentationSkeleton.ipynb
+            examples/SelectRegionOfInterest.ipynb
+            examples/SpecifyAColormap.ipynb
+            examples/VolumeOpacityTransferFunction.ipynb
+            examples/vtkImageData.ipynb
+            examples/vtkPolyData.ipynb
+            examples/vtkUnstructuredGrid.ipynb
+        env:
+          MPLBACKEND: Qt5Agg

.github/workflows/notebook-test.yml

@@ -49,7 +49,7 @@ Interactive Jupyter_ widgets to visualize images, point sets, and meshes on the
   - `Dask array <https://docs.dask.org/en/latest/array.html>`_ images
   - `vtk.vtkImageData <https://vtk.org>`_
   - `pyvista.UniformGrid <https://pyvista.org>`_
-  - `vtkplotter.Volume <https://vtkplotter.embl.es/index.html>`_
+  - `vedo.Volume <https://vedo.embl.es/index.html>`_
   - `pyimagej ImageJ / Fiji / ImageJ2 images <https://github.com/imagej/pyimagej>`_
   - Additional NumPy array-like objects
   - `SimpleITK.Image <https://simpleitk-prototype.readthedocs.io/en/latest/user_guide/plot_image.html#sphx-glr-user-guide-plot-image-py>`_
@@ -71,8 +71,8 @@ Interactive Jupyter_ widgets to visualize images, point sets, and meshes on the
   - `pyvista.PolyData <https://docs.pyvista.org/core/points.html>`_
   - `pyvista.StructuredGrid <https://docs.pyvista.org/core/point-grids.html#structured-grid-creation>`_
   - `pyvista.UnstructuredGrid <https://docs.pyvista.org/core/point-grids.html#unstructured-grid-creation>`_
-  - `vtkplotter.Actor <https://vtkplotter.embl.es/index.html>`_
-  - `vtkplotter.Assembly <https://vtkplotter.embl.es/index.html>`_
+  - `vedo.Actor <https://vedo.embl.es/index.html>`_
+  - `vedo.Assembly <https://vedo.embl.es/index.html>`_
   - `skan.csr.Skeleton <https://jni.github.io/skan/api/skan.csr.html#module-skan.csr>`_
 
 - Exquisite volume rendering
@@ -285,7 +285,7 @@ After installation, try the following examples that demonstrate how to visualize
 - `pyvista StructuredGrid <https://github.com/InsightSoftwareConsortium/itkwidgets/blob/master/examples/pyvista.StructuredGrid.ipynb>`_
 - `pyvista UnstructuredGrid <https://github.com/InsightSoftwareConsortium/itkwidgets/blob/master/examples/pyvista.UnstructuredGrid.ipynb>`_
 - `pyvista LiDAR <https://github.com/InsightSoftwareConsortium/itkwidgets/blob/master/examples/pyvistaLiDAR.ipynb>`_
-- `vtkplotter actors and volumes <https://github.com/InsightSoftwareConsortium/itkwidgets/blob/master/examples/vtkplotter.ipynb>`_
+- `vedo actors and volumes <https://github.com/InsightSoftwareConsortium/itkwidgets/blob/master/examples/vedo.ipynb>`_
 - `skan segmentation skeleton <https://github.com/InsightSoftwareConsortium/itkwidgets/blob/master/examples/SegmentationSkeleton.ipynb>`_
 
 or how to:
@@ -364,6 +364,7 @@ Participation is welcome! For a development installation (requires `Node.js <htt
   jupyter nbextension enable --py --sys-prefix itkwidgets
   jupyter nbextension enable --py --sys-prefix widgetsnbextension
   python -m pytest
+  python -m pytest --nbmake examples/*.ipynb
 
 The above commands will setup your system for development with the Jupyter
 Notebook. In one terminal, start Jupyter::