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Merge pull request #559 from thewtex/all-extras
ENH: Add 'all' package extras and use in examples
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‎README.md‎

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## Installation
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To install for all environments:
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```bash
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pip install 'itkwidgets[all]>=1.0a16'
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```
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### Jupyter Notebook
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To install the widgets for the Jupyter Notebook with pip:
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```bash
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pip install 'itkwidgets[notebook]>=1.0a8'
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pip install 'itkwidgets[notebook]>=1.0a16'
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```
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Then look for the ImJoy icon at the top in the Jupyter Notebook:
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For Jupyter Lab 3 run:
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```bash
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pip install 'itkwidgets[lab]>=1.0a8'
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pip install 'itkwidgets[lab]>=1.0a16'
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```
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Then look for the ImJoy icon at the top in the Jupyter Notebook:
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For Google Colab run:
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```bash
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pip install 'itkwidgets>=1.0a8'
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pip install 'itkwidgets>=1.0a16'
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```
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## Example Notebooks

‎docs/quick_start_guide.md‎

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## Installation
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To install for all environments:
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```bash
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pip install 'itkwidgets[all]>=1.0a16'
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```
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### Jupyter Notebook
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To install the widgets for the Jupyter Notebook with pip:
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```bash
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pip install 'itkwidgets[notebook]>=1.0a8'
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pip install 'itkwidgets[notebook]>=1.0a16'
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```
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Then look for the ImJoy icon at the top in the Jupyter Notebook:
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For Jupyter Lab 3 run:
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```bash
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pip install 'itkwidgets[lab]>=1.0a8'
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pip install 'itkwidgets[lab]>=1.0a16'
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```
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Then look for the ImJoy icon at the top in the Jupyter Notebook:
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For Google Colab run:
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```bash
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pip install 'itkwidgets>=1.0a8'
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pip install 'itkwidgets>=1.0a16'
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```
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## Example Notebooks

‎examples/Hello3DWorld.ipynb‎

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"source": [
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"import sys\n",
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"\n",
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"!{sys.executable} -m pip install -q imageio \"itkwidgets>=1.0a6\""
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"!{sys.executable} -m pip install -q imageio \"itkwidgets[all]>=1.0a16\""
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]
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},
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{
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.7.12"
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"version": "3.10.5"
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}
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},
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"nbformat": 4,

‎examples/NumPyArrayPointSet.ipynb‎

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"source": [
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"import sys\n",
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"\n",
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"!{sys.executable} -m pip install -q \"itkwidgets>=1.0a6\""
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"!{sys.executable} -m pip install -q \"itkwidgets[all]>=1.0a16\""
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]
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},
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{
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.8.10"
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"version": "3.10.5"
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}
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},
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"nbformat": 4,

‎examples/integrations/MONAI/transform_visualization.ipynb‎

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"# Install dependencies for this example\n",
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"import sys\n",
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"\n",
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"!{sys.executable} -m pip install -q \"monai-weekly[nibabel, matplotlib, tqdm]\" \"itkwidgets>=1.0a6\""
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"!{sys.executable} -m pip install -q \"monai-weekly[nibabel, matplotlib, tqdm]\" \"itkwidgets[all]>=1.0a16\""
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]
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},
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{
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.8.10"
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"version": "3.10.5"
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}
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},
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"nbformat": 4,

‎examples/integrations/PyImageJ/ImageJImgLib2.ipynb‎

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"# Install dependencies for this example\n",
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"import sys\n",
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"\n",
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"!conda install --yes --prefix {sys.prefix} -c conda-forge pyimagej"
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"!conda install --yes --prefix {sys.prefix} -c conda-forge pyimagej\n",
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"!{sys.executable} -m pip install -q \"itkwidgets[all]>=1.0a16\""
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]
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},
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{
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.8.10"
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"version": "3.10.5"
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}
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},
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"nbformat": 4,

‎examples/integrations/PyVista/LiDAR.ipynb‎

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"# Install dependencies for this example\n",
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"import sys\n",
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"\n",
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"!{sys.executable} -m pip install -q pyvista \"itkwidgets>=1.0a6\""
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"!{sys.executable} -m pip install -q pyvista \"itkwidgets[all]>=1.0a16\""
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]
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},
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{
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.8.10"
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"version": "3.10.5"
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}
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},
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"nbformat": 4,

‎examples/integrations/PyVista/UniformGrid.ipynb‎

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"# Install dependencies for this example\n",
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"import sys\n",
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"\n",
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"!{sys.executable} -m pip install -q pyvista \"itkwidgets>=1.0a6\""
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"!{sys.executable} -m pip install -q pyvista \"itkwidgets[all]>=1.0a16\""
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]
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},
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{
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.8.10"
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"version": "3.10.5"
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}
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},
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"nbformat": 4,

‎examples/integrations/dask/DaskArray.ipynb‎

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"import sys\n",
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"\n",
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"!{sys.executable} -m pip install -q --upgrade --pre itk-io\n",
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"!{sys.executable} -m pip install -q 'dask[diagnostics]' toolz scikit-image pooch matplotlib \"itkwidgets>=1.0a6\""
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"!{sys.executable} -m pip install -q 'dask[diagnostics]' toolz scikit-image pooch matplotlib \"itkwidgets[all]>=1.0a16\""
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]
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},
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{
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.9.13"
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"version": "3.10.5"
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}
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},
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"nbformat": 4,

‎examples/integrations/itk/3DImage.ipynb‎

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"# Install dependencies for this example\n",
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"import sys\n",
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"\n",
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"!{sys.executable} -m pip install -q --upgrade --pre itk-io \"itkwidgets>=1.0a6\""
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"!{sys.executable} -m pip install -q --upgrade --pre itk-io \"itkwidgets[all]>=1.0a16\""
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]
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.9.13"
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"version": "3.10.5"
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}
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},
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"nbformat": 4,

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