Merge branch 'master' into unskip_cholesky_arl

Author: antonwolfy

.github/CODEOWNERS

@@ -1 +1 @@
-* @antonwolfy @AlexanderKalistratov @vlad-perevezentsev @vtavana @ndgrigorian
+* @antonwolfy @vlad-perevezentsev @ndgrigorian

.github/workflows/cron-run-tests.yaml

@@ -39,6 +39,18 @@ jobs:
       matrix:
         python: ['3.9', '3.10', '3.11', '3.12', '3.13']
         runner: [ubuntu-22.04, ubuntu-24.04, windows-2022]
+        include:
+          - python: 3.9
+            # do not install scipy due to import issue
+            test-packages: "pytest"
+          - python: 3.10
+            test-packages: "pytest scipy"
+          - python: 3.11
+            test-packages: "pytest scipy"
+          - python: 3.12
+            test-packages: "pytest scipy"
+          - python: 3.13
+            test-packages: "pytest scipy"
 
     steps:
       - name: Cancel Previous Runs
@@ -84,12 +96,12 @@ jobs:
         id: install_dpnp
         continue-on-error: true
         run: |
-          mamba install ${{ env.package-name }}=${{ steps.find_latest_tag.outputs.tag }} pytest scipy ${{ env.channels-list }}
+          mamba install ${{ env.package-name }}=${{ steps.find_latest_tag.outputs.tag }} ${{ matrix.test-packages }} ${{ env.channels-list }}
 
       - name: ReInstall dpnp
         if: steps.install_dpnp.outcome == 'failure'
         run: |
-          mamba install ${{ env.package-name }}=${{ steps.find_latest_tag.outputs.tag }} pytest scipy ${{ env.channels-list }}
+          mamba install ${{ env.package-name }}=${{ steps.find_latest_tag.outputs.tag }} ${{ matrix.test-packages }} ${{ env.channels-list }}
 
       - name: List installed packages
         run: mamba list

.github/workflows/openssf-scorecard.yml

@@ -72,6 +72,6 @@ jobs:
 
       # Upload the results to GitHub's code scanning dashboard.
       - name: "Upload to code-scanning"
-        uses: github/codeql-action/upload-sarif@192325c86100d080feab897ff886c34abd4c83a3 # v3.30.3
+        uses: github/codeql-action/upload-sarif@3599b3baa15b485a2e49ef411a7a4bb2452e7f93 # v3.30.5
         with:
           sarif_file: results.sarif

.github/workflows/pre-commit-autoupdate.yml

@@ -8,13 +8,20 @@ on:
   schedule:
     - cron: '28 2 * * 6' # Saturday at 02:28 UTC
 
+permissions: read-all
+
 jobs:
   autoupdate:
     name: Autoupdate
 
     runs-on: ubuntu-latest
     timeout-minutes: 10
 
+    permissions:
+      # Needed to create a PR with autoupdate changes
+      contents: write
+      pull-requests: write
+
     steps:
       - name: Checkout DPNP repo
         uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5.0.0

CHANGELOG.md

@@ -17,6 +17,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 * Added `dpnp.ndarray.__contains__` method [#2534](https://github.com/IntelPython/dpnp/pull/2534)
 * Added implementation of `dpnp.linalg.lu_factor` (SciPy-compatible) [#2557](https://github.com/IntelPython/dpnp/pull/2557), [#2565](https://github.com/IntelPython/dpnp/pull/2565)
 * Added implementation of `dpnp.piecewise` [#2550](https://github.com/IntelPython/dpnp/pull/2550)
+* Added implementation of `dpnp.linalg.lu_solve` for 2D inputs (SciPy-compatible) [#2575](https://github.com/IntelPython/dpnp/pull/2575)
+* Added implementation of `dpnp.special.erfc` [#2588](https://github.com/IntelPython/dpnp/pull/2588)
 
 ### Changed
 
@@ -43,6 +45,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 * Extended `dpnp.pad` to support `pad_width` keyword as a dictionary [#2535](https://github.com/IntelPython/dpnp/pull/2535)
 * Redesigned `dpnp.erf` function through pybind11 extension of OneMKL call or dedicated kernel in `ufunc` namespace [#2551](https://github.com/IntelPython/dpnp/pull/2551)
 * Improved performance of batched implementation of `dpnp.linalg.det` and `dpnp.linalg.slogdet` [#2572](https://github.com/IntelPython/dpnp/pull/2572)
+* Improved documentations of `dpnp.tril_indices` and `dpnp.triu_indices` to clarify the returned order of indices [#2586](https://github.com/IntelPython/dpnp/pull/2586)
+* `dpnp` uses pybind11 3.0.1 [#2594](https://github.com/IntelPython/dpnp/pull/2594)
 
 ### Deprecated
 
@@ -57,10 +61,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 * Updated `pre-commit` GitHub workflow to pass `no-commit-to-branch` check [#2501](https://github.com/IntelPython/dpnp/pull/2501)
 * Updated the math formulas in summary of `dpnp.matvec` and `dpnp.vecmat` to correct a typo [#2503](https://github.com/IntelPython/dpnp/pull/2503)
 * Avoided negating unsigned integers in ceil division used in `dpnp.resize` implementation [#2508](https://github.com/IntelPython/dpnp/pull/2508)
-* Fixed `dpnp.unique` with 1d input array and `axis=0`, `equal_nan=True` keywords passed where the produced result doesn't collapse the NaNs [#2530](https://github.com/IntelPython/dpnp/pull/2530)
+* Fixed `dpnp.unique` with 1d input array and `axis=0`, `equal_nan=True` keywords passed where the produced result doesn't collapse the NaNs [#2530](https://github.com/IntelPython/dpnp/pull/2530), [#2587](https://github.com/IntelPython/dpnp/pull/2587)
 * Resolved issue when `dpnp.ndarray` constructor is called with `dpnp.ndarray.data` as `buffer` keyword [#2533](https://github.com/IntelPython/dpnp/pull/2533)
 * Fixed `dpnp.linalg.cond` to always return a real dtype [#2547](https://github.com/IntelPython/dpnp/pull/2547)
 * Resolved the issue in `dpnp.random` functions to allow any value of `size` where each element is castable to `Py_ssize_t` type [#2578](https://github.com/IntelPython/dpnp/pull/2578)
+* Resolved `conda build --test` issue in python 3.9 environment [#2583](https://github.com/IntelPython/dpnp/pull/2583)
+* Fixed tests for the rounding functions to depend on minimum required numpy version [#2589](https://github.com/IntelPython/dpnp/pull/2589)
+* Fixed tests for the ufuncs to depend on minimum required numpy version [#2590](https://github.com/IntelPython/dpnp/pull/2590)
+* Added missing permission definition in `Autoupdate pre-commit` GitHub workflow [#2591](https://github.com/IntelPython/dpnp/pull/2591)
 
 ### Security
 

CMakeLists.txt

@@ -53,8 +53,8 @@ include(GNUInstallDirs)
 include(FetchContent)
 FetchContent_Declare(
     pybind11
-    URL https://github.com/pybind/pybind11/archive/refs/tags/v2.13.6.tar.gz
-    URL_HASH SHA256=e08cb87f4773da97fa7b5f035de8763abc656d87d5773e62f6da0587d1f0ec20
+    URL https://github.com/pybind/pybind11/archive/refs/tags/v3.0.1.tar.gz
+    URL_HASH SHA256=741633da746b7c738bb71f1854f957b9da660bcd2dce68d71949037f0969d0ca
     FIND_PACKAGE_ARGS NAMES pybind11
 )
 FetchContent_MakeAvailable(pybind11)

conda-recipe/meta.yaml

@@ -63,7 +63,7 @@ test:
     requires:
       - pytest
       - setuptools
-      - scipy
+      - scipy # [py>39]
 
 about:
     home: https://github.com/IntelPython/dpnp
@@ -83,7 +83,5 @@ about:
 extra:
     recipe-maintainers:
         - antonwolfy
-        - AlexanderKalistratov
-        - vtavana
         - vlad-perevezentsev
         - ndgrigorian

doc/reference/linalg.rst

@@ -86,6 +86,7 @@ Solving linear equations
    dpnp.linalg.solve
    dpnp.linalg.tensorsolve
    dpnp.linalg.lstsq
+   dpnp.linalg.lu_solve
    dpnp.linalg.inv
    dpnp.linalg.pinv
    dpnp.linalg.tensorinv

dpnp/backend/extensions/blas/CMakeLists.txt

@@ -60,8 +60,7 @@ endif()
 
 set_target_properties(${python_module_name} PROPERTIES CMAKE_POSITION_INDEPENDENT_CODE ON)
 
-target_include_directories(${python_module_name} PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/../../include)
-target_include_directories(${python_module_name} PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/../../src)
+target_include_directories(${python_module_name} PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/../../)
 target_include_directories(${python_module_name} PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/../common)
 
 target_include_directories(${python_module_name} PUBLIC ${Dpctl_INCLUDE_DIRS})

dpnp/backend/extensions/blas/blas_py.cpp

@@ -30,6 +30,9 @@
 #include <pybind11/pybind11.h>
 #include <pybind11/stl.h>
 
+// utils extension header
+#include "ext/common.hpp"
+
 #include "dot.hpp"
 #include "dot_common.hpp"
 #include "dotc.hpp"
@@ -41,7 +44,9 @@
 namespace blas_ns = dpnp::extensions::blas;
 namespace py = pybind11;
 namespace dot_ns = blas_ns::dot;
+
 using dot_ns::dot_impl_fn_ptr_t;
+using ext::common::init_dispatch_vector;
 
 // populate dispatch vectors and tables
 void init_dispatch_vectors_tables(void)
@@ -64,7 +69,7 @@ PYBIND11_MODULE(_blas_impl, m)
     using event_vecT = std::vector<sycl::event>;
 
     {
-        dot_ns::init_dot_dispatch_vector<blas_ns::DotContigFactory>(
+        init_dispatch_vector<dot_impl_fn_ptr_t, blas_ns::DotContigFactory>(
             dot_dispatch_vector);
 
         auto dot_pyapi = [&](sycl::queue &exec_q, const arrayT &src1,
@@ -82,7 +87,7 @@ PYBIND11_MODULE(_blas_impl, m)
     }
 
     {
-        dot_ns::init_dot_dispatch_vector<blas_ns::DotcContigFactory>(
+        init_dispatch_vector<dot_impl_fn_ptr_t, blas_ns::DotcContigFactory>(
             dotc_dispatch_vector);
 
         auto dotc_pyapi = [&](sycl::queue &exec_q, const arrayT &src1,
@@ -101,7 +106,7 @@ PYBIND11_MODULE(_blas_impl, m)
     }
 
     {
-        dot_ns::init_dot_dispatch_vector<blas_ns::DotuContigFactory>(
+        init_dispatch_vector<dot_impl_fn_ptr_t, blas_ns::DotuContigFactory>(
             dotu_dispatch_vector);
 
         auto dotu_pyapi = [&](sycl::queue &exec_q, const arrayT &src1,