diff --git a/.github/workflows/pre-commit-autoupdate.yml b/.github/workflows/pre-commit-autoupdate.yml
new file mode 100644
index 000000000000..3d40adc8b78b
--- /dev/null
+++ b/.github/workflows/pre-commit-autoupdate.yml
@@ -0,0 +1,45 @@
+name: Autoupdate pre-commit
+
+on:
+  # For Branch-Protection check. Only the default branch is supported. See
+  # https://github.com/ossf/scorecard/blob/main/docs/checks.md#branch-protection
+  branch_protection_rule:
+  # To guarantee Maintained check is occasionally updated. See
+  # https://github.com/ossf/scorecard/blob/main/docs/checks.md#maintained
+  schedule:
+    - cron: '28 2 * * 6' # Saturday at 02:28 UTC
+  workflow_dispatch:
+
+jobs:
+  autoupdate:
+    name: Autoupdate
+
+    runs-on: ubuntu-latest
+    timeout-minutes: 10
+
+    steps:
+      - name: Checkout DPNP repo
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
+
+      - name: Set up python
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
+        with:
+          python-version: '3.13'
+
+      - name: Install pre-commit
+        run: pip install pre-commit
+
+      - name: Run pre-commit autoupdate
+        run: pre-commit autoupdate
+
+      - name: Create a PR with autoupdate changes
+        uses: peter-evans/create-pull-request@271a8d0340265f705b14b6d32b9829c1cb33d45e #v7.0.8
+        with:
+          commit-message: 'chore: update pre-commit hooks'
+          add-paths: .pre-commit-config.yaml
+          branch: 'bot/pre-commit-autoupdate'
+          delete-branch: true
+          title: Weekly pre-commit autoupdate
+          body: |
+            This PR updates the `.pre-commit-config.yaml` using `pre-commit autoupdate`.
+          labels: autoupdate
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 033de2bb2aff..16f220cd171a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,9 +1,3 @@
-# See https://pre-commit.ci for more details
-ci:
-    autofix_commit_msg: 'style: pre-commit fixes'
-    autoupdate_commit_msg: 'chore: update pre-commit hooks'
-    autoupdate_schedule: weekly
-
 # See https://pre-commit.com for more information
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 2acb9cd4a5eb..6d87aadd1824 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -31,6 +31,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 * Replaced the use of `numpy.testing.suppress_warnings` with appropriate calls from the warnings module [#2529](https://github.com/IntelPython/dpnp/pull/2529)
 * Improved documentations of `dpnp.ndarray` class and added a page with description of supported constants [#2422](https://github.com/IntelPython/dpnp/pull/2422)
 * Updated `dpnp.size` to accept tuple of ints for `axes` argument [#2536](https://github.com/IntelPython/dpnp/pull/2536)
+* Replaced `ci` section in `.pre-commit-config.yaml` with a new GitHub workflow with scheduled run to autoupdate the `pre-commit` configuration [#2542](https://github.com/IntelPython/dpnp/pull/2542)
 
 ### Deprecated