BestPracticesST/DESCRIPTION at main · IraisVal/BestPracticesST · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
Package: BestPracticesST
Title: Best Practices for Spatial Transcriptomics Analysis with Bioconductor
Description: This package contains source code and materials for the 'Best
    Practices for Spatial Transcriptomics Analysis with Bioconductor' online
    book. The book contains examples of analysis steps and workflows
    demonstrating best practices for spatial transcriptomics analyses using the
    Bioconductor framework in R. The examples include R code and downloadable
    datasets.
Version: 0.99.0
Authors@R:
    c(person("Lukas M.", "Weber",
             role = c("aut", "cre"),
             email = "lmweberedu@gmail.com",
             comment = c(ORCID = "0000-0002-3282-1730")),
      person("Leonardo", "Collado-Torres",
             role = c("aut"),
             email = "lcolladotor@gmail.com",
             comment = c(ORCID = "0000-0003-2140-308X")),
      person("Stephanie C.", "Hicks",
             role = c("aut"),
             email = "shicks19@jhu.edu",
             comment = c(ORCID = "0000-0002-7858-0231")))
License: CC BY 4.0
URL: https://github.com/lmweber/BestPracticesST
BugReports: https://github.com/lmweber/BestPracticesST/issues
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
biocViews:
    Book,
    Spatial,
    SingleCell,
    Transcriptomics,
    GeneExpression
Depends:
    SpatialExperiment
Imports:
    bookdown,
    BiocFileCache,
    BiocStyle,
    knitr,
    rmarkdown,
    ExperimentHub,
    devtools,
    SingleCellExperiment,
    STexampleData,
    DelayedMatrixStats,
    ggspavis,
    igraph,
    lobstr,
    pheatmap,
    rtracklayer,
    scater,
    scran,
    sessioninfo,
    spatialLIBD,
    uwot,
    nnSVG
Suggests:
    RefManageR
VignetteBuilder: knitr
RoxygenNote: 7.1.1