Merge branch 'release/1.9.0' of https://github.com/jcsda/spack-stack into feature/rel193_final_touches

Author: climbfuji

configs/sites/tier1/derecho/compilers.yaml

@@ -2,45 +2,32 @@ compilers::
 - compiler:
     spec: [email protected]
     paths:
-      cc: /glade/u/apps/common/23.08/spack/opt/spack/intel-oneapi-compilers/2024.2.1/compiler/2024.2/bin/icx
-      cxx: /glade/u/apps/common/23.08/spack/opt/spack/intel-oneapi-compilers/2024.2.1/compiler/2024.2/bin/icpx
-      f77: /glade/u/apps/common/23.08/spack/opt/spack/intel-oneapi-compilers/2024.2.1/compiler/2024.2/bin/ifort
-      fc: /glade/u/apps/common/23.08/spack/opt/spack/intel-oneapi-compilers/2024.2.1/compiler/2024.2/bin/ifort
+      cc: /glade/u/apps/casper/24.12/spack/opt/spack/intel-oneapi-compilers/2024.2.1/gcc/12.4.0/iq3b/compiler/2024.2/bin/icx
+      cxx: /glade/u/apps/casper/24.12/spack/opt/spack/intel-oneapi-compilers/2024.2.1/gcc/12.4.0/iq3b/compiler/2024.2/bin/icpx
+      f77: /glade/u/apps/casper/24.12/spack/opt/spack/intel-oneapi-compilers/2024.2.1/gcc/12.4.0/iq3b/compiler/2024.2/bin/ifort
+      fc: /glade/u/apps/casper/24.12/spack/opt/spack/intel-oneapi-compilers/2024.2.1/gcc/12.4.0/iq3b/compiler/2024.2/bin/ifort
     flags: {}
     operating_system: sles15
     target: x86_64
     modules:
-    - ncarenv/23.09
-    - intel-oneapi/2024.2.1
+    - ncarenv/24.12
+    - intel/2024.2.1
     environment:
       prepend_path:
-        PATH: '/opt/cray/pe/gcc/12.2.0/snos/bin'
-        CPATH: '/opt/cray/pe/gcc/12.2.0/snos/include'
-        LD_LIBRARY_PATH: '/opt/cray/pe/gcc/12.2.0/snos/lib:/opt/cray/pe/gcc/12.2.0/snos/lib64'
-      set:
-        # https://github.com/JCSDA/spack-stack/issues/957
-        FI_CXI_RX_MATCH_MODE: 'hybrid'
-        # https://github.com/JCSDA/spack-stack/issues/1012
-        I_MPI_EXTRA_FILESYSTEM: 'ON'
-    extra_rpaths: []
+        PATH: '/glade/u/apps/casper/24.12/spack/opt/spack/gcc/12.4.0/5b5c/bin'
+        CPATH: '/glade/u/apps/casper/24.12/spack/opt/spack/gcc/12.4.0/5b5c/include'
+        LD_LIBRARY_PATH: '/glade/u/apps/casper/24.12/spack/opt/spack/gcc/12.4.0/5b5c/lib:/glade/u/apps/casper/24.12/spack/opt/spack/gcc/12.4.0/5b5c/lib64'
+
 - compiler:
-    spec: gcc@12.2.0
+    spec: gcc@12.4.0
     paths:
-      cc: /opt/cray/pe/gcc/12.2.0/bin/gcc
-      cxx: /opt/cray/pe/gcc/12.2.0/bin/g++
-      f77: /opt/cray/pe/gcc/12.2.0/bin/gfortran
-      fc: /opt/cray/pe/gcc/12.2.0/bin/gfortran
+      cc: /glade/u/apps/casper/24.12/spack/opt/spack/gcc/12.4.0/5b5c/bin/gcc
+      cxx: /glade/u/apps/casper/24.12/spack/opt/spack/gcc/12.4.0/5b5c/bin/g++
+      f77: /glade/u/apps/casper/24.12/spack/opt/spack/gcc/12.4.0/5b5c/bin/gfortran
+      fc: /glade/u/apps/casper/24.12/spack/opt/spack/gcc/12.4.0/5b5c/bin/gfortran
     flags: {}
     operating_system: sles15
     target: x86_64
     modules:
-    - ncarenv/23.09
-    - gcc/12.2.0
-    environment:
-      prepend_path:
-        # For compiling scotch (which requires Intel MPI) with gcc in the [email protected] unified environment
-        LD_LIBRARY_PATH: '/glade/u/apps/common/23.08/spack/opt/spack/intel-oneapi-compilers/2024.2.1/compiler/2024.2/lib'
-      set:
-        # https://github.com/JCSDA/spack-stack/issues/957
-        FI_CXI_RX_MATCH_MODE: 'hybrid'
-    extra_rpaths: []
+    - ncarenv/24.12
+    - gcc/12.4.0

configs/sites/tier1/derecho/modules.yaml

@@ -4,5 +4,4 @@ modules:
     - lmod
     lmod:
       include:
-      - cray-mpich
       - python

configs/sites/tier1/derecho/packages.yaml

@@ -34,10 +34,6 @@ packages:
     externals:
     - spec: [email protected]
       prefix: /usr
-  curl:
-    externals:
-    - spec: [email protected]+gssapi+ldap+nghttp2
-      prefix: /glade/u/apps/derecho/23.09/spack/opt/spack/curl/8.1.2/gcc/7.5.0/uq6y
   cvs:
     externals:
     - spec: [email protected]
@@ -56,14 +52,12 @@ packages:
       prefix: /usr
   git:
     externals:
-    - spec: [email protected]+tcltk
-      prefix: /glade/u/apps/derecho/23.09/spack/opt/spack/git/2.41.0/gcc/7.5.0/jgni
-    - spec: [email protected]+tcltk
-      prefix: /usr
+    - spec: [email protected]
+      prefix: /glade/u/apps/casper/24.12/spack/opt/spack/git/2.47.0/gcc/12.4.0/cn62
   git-lfs:
     externals:
-    - spec: git-lfs@3.3.0
-      prefix: /glade/u/apps/derecho/23.09/spack/opt/spack/git-lfs/3.3.0/gcc/7.5.0/u3kh
+    - spec: git-lfs@3.5.1
+      prefix: /glade/u/apps/casper/24.12/spack/opt/spack/git-lfs/3.5.1/gcc/12.4.0/aivb
   gmake:
     externals:
     - spec: [email protected]
@@ -85,17 +79,17 @@ packages:
     - spec: [email protected]
       prefix: /usr
   mysql:
-    buildable: False
+    buildable: false
     externals:
     - spec: [email protected]
       prefix: /glade/work/epicufsrt/contrib/spack-stack/derecho/mysql-8.0.33
   openssh:
     externals:
     - spec: [email protected]
       prefix: /usr
-  # spack concretizer gets confused when omitting %gcc from the external spec (a spack bug?)
+# spack concretizer gets confused when omitting %gcc from the external spec (a spack bug?)
   openssl:
-    buildable: False
+    buildable: false
     externals:
     - spec: [email protected]%gcc
       prefix: /usr
@@ -104,9 +98,12 @@ packages:
     - spec: [email protected]
       prefix: /usr
   qt:
-    buildable: False
+    buildable: false
     externals:
     - spec: [email protected]
+   # Newer versions don't work, some headers are missing
+    #prefix: /glade/u/apps/casper/24.12/spack/opt/spack/qt/5.14.2/gcc/12.4.0/6suc
+    #prefix: /glade/u/apps/casper/24.12/spack/opt/spack/qt/5.14.2/gcc/12.4.0/axtw
       prefix: /glade/u/apps/derecho/23.09/spack/opt/spack/qt/5.14.2/gcc/7.5.0/eqcj
   sed:
     externals:

configs/sites/tier1/derecho/packages_gcc.yaml

@@ -1,15 +1,16 @@
 packages:
   all:
-    compiler:: [gcc@12.2.0]
+    compiler:: [gcc@12.4.0]
     providers:
-      mpi:: [[email protected].27]
+      mpi:: [[email protected].29]
   mpi:
     buildable: False
   cray-mpich:
     externals:
-    - spec: [email protected].27%gcc@12.2.0 +wrappers
+    - spec: [email protected].29%gcc@12.4.0 +wrappers
       modules:
-      - craype/2.7.20
-      - cray-mpich/8.1.27
+      - craype/2.7.31
+      - ncarenv/24.12
+      - gcc/12.4.0 
       - libfabric/1.15.2.0
-      - cray-pals/1.2.11
+      - cray-mpich/8.1.29

configs/sites/tier1/derecho/packages_oneapi.yaml

@@ -1,23 +1,24 @@
 packages:
   all:
-    compiler:: [[email protected], gcc@12.2.0]
+    compiler:: [[email protected], gcc@12.4.0]
     providers:
       mpi:: [[email protected]]
   mpi:
-    buildable: False
+    buildable: false
   cray-mpich:
     externals:
     - spec: [email protected]%[email protected] +wrappers
       modules:
-      - craype/2.7.20
-      - cray-mpich/8.1.29
+      - ncarenv/24.12
+      - craype/2.7.31
+      - intel/2024.2.1
       - libfabric/1.15.2.0
-      - cray-pals/1.2.11
+      - cray-mpich/8.1.29
   intel-oneapi-runtime:
     buildable: False
     externals:
     - spec: [email protected]%[email protected]
-      prefix: /glade/u/apps/common/23.08/spack/opt/spack/intel-oneapi-compilers/2024.2.1
+      prefix: /glade/u/apps/casper/24.12/spack/opt/spack/intel-oneapi-compilers/2024.2.1/gcc/12.4.0/iq3b/compiler/2024.2
   intel-oneapi-mkl:
     # No intel-oneapi-mkl installed on Derecho, install via spack.
     # Prefer the version that Intel releases with the above compiler